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Detailed information on CNT30558966


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697365Actinidia chinensisOryza sativa27.8436.8485.7198forward
CNT3070360Actinidia chinensisQuercus suber28.6935.4485.15101forward
CNT3074841Actinidia chinensisBrassica juncea26.9919.1983.1695forward
CNT30651694Actinidia chinensisRosa chinensis73.370.1186.05258forward

Expression of CNT30558966

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPWLCRHFSFSIRSWISGSTVVNEVFPHSLTGS

>peptide 2 (52 aa)
GDFLPAGGVIAVGQVAARGEIEAHDAVVGVEDGGVGGEVGGASGVGLDVDAP*

Sequence

>CNT30558966
GGAGATTTTCTTCCCGCTGGAGGTGTAATAGCCGTGGGTCAAGTGGCCGCCAGAGGGGAGATCGAGGCCCATGATGCGGTCGTGGGGGTTGAGGACGGCG
GTGTAGGCGGCGAAGTTGGCGGGGCTTCCGGAGTAGGGCTGGACGTTGACGCCCCATGAGGCGGGGTCGAGGCGGTAGGCGGCGAGGGCGCGGCTGCGGC
AGAGGGCCTCGATCACGGCGAAGGAGGTGAAGTTCTCCGACGCGATCAGCTCGATGCCATGGCTCTGCCGCCACTTCTCCTTCTCGATCAGGTCGTGGAT
CTCCGGGTCCACCGTGGTTAACGAGGTGTTTCCCCATTCGCTCACTGGATCC