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Detailed information on CNT30558965


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524209Actinidia chinensisSetaria italica51.799.3889.08174forward
CNT30709157Actinidia chinensisGlycine max60.4232.1787.19203forward
CNT30179070Actinidia chinensisSecale cereale28.8719.7686.697forward
CNT30248558Actinidia chinensisAvena sativa74.1144.3181.12249forward
CNT30650801Actinidia chinensisRosa chinensis52.0813.3285.71175forward
CNT30714749Actinidia chinensisMalus domestica golden55.9581.0383.51188forward
CNT30365509Actinidia chinensisSorghum bicolor67.2633.0983.19226forward
CNT30620724Actinidia chinensisCajanus cajan51.7927.186.78174forward
CNT30117918Actinidia chinensisOryza nivara33.9312.6886.84114forward

Expression of CNT30558965

Peptides detected in this lncRNA

>peptide 1 (61 aa)
QALEVNGGGGDFLPAGGVIAVGQVAARGEIEAHDAVVGVEDGGVGGEVGGASGVGLDVDAP*

>peptide 2 (49 aa)
MRRGRGGRRRGRGCGRGSRSGRGSPGPPWLTRCFPIRSLDPLLQRERERE

>peptide 3 (33 aa)
ASSRSKWRWRRFSSRWRCNSRGSSGRQRGDRGP*

Sequence

>CNT30558965
GGCAAGCTCTCGAAGTAAATGGAGGTGGCGGAGATTTTCTTCCCGCTGGAGGTGTAATAGCCGTGGGTCAAGTGGCCGCCAGAGGGGAGATCGAGGCCCA
TGATGCGGTCGTGGGGGTTGAGGACGGCGGTGTAGGCGGCGAAGTTGGCGGGGCTTCCGGAGTAGGGCTGGACGTTGACGCCCCATGAGGCGGGGTCGAG
GCGGTAGGCGGCGAGGGCGCGGCTGCGGCAGAGGTTCTCGATCTGGTCGTGGATCTCCGGGTCCACCGTGGTTAACGAGGTGTTTCCCCATTCGCTCACT
GGATCCATTGTTGCAGAGAGAGAGAGAGAGAGAGAG