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Detailed information on CNT30558912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695553Panicum halliiOryza sativa26.0712.0795.5267forward
CNT30678616Panicum halliiSetaria viridis26.0713.7398.5167forward
CNT30522550Panicum halliiSetaria italica26.0714.0898.5167forward
CNT30298930Panicum halliiTriticum aestivum26.078.0697.0167forward
CNT30393705Panicum halliiTriticum turgidum26.077.3697.0167forward
CNT30554655Panicum halliiOryza glaberrima26.077.6695.5267forward
CNT30440464Panicum halliiAegilops tauschii26.078.0797.0167forward
CNT30249341Panicum halliiAvena sativa26.0711.0798.5167forward
CNT30664930Panicum halliiTriticum dicoccoides26.4621.1897.0668forward
CNT3010182Panicum halliiZea mays26.078.5494.0367forward
CNT30349618Panicum halliiEragrostis tef24.913.8895.3164forward
CNT30361778Panicum halliiSorghum bicolor21.47.5198.1855forward
CNT30596768Panicum halliiOryza meridionalis26.078.5695.5267forward
CNT30370885Panicum halliiOryza glumipatula26.079.6595.5267forward
CNT30148202Panicum halliiBrachypodium distachyon23.3511.0191.6760forward
CNT30577354Panicum halliiOryza barthii26.078.1595.5267forward
CNT30579578Panicum halliiEchinochloa crusgalli26.858.3898.5569forward
CNT30499040Panicum halliiDigitaria exilis26.8510.1594.269forward
CNT30117448Panicum halliiOryza nivara26.079.9395.5267forward

Expression of CNT30558912

Peptides detected in this lncRNA

>peptide 1 (82 aa)
IIKGFHACIISTITKESLIVKLHIDRPFRSINHAPNSWIVVAHDSHRSKVFLPVNLTSMGLTFFPMLRKLAWPWPSASSGGS*

>peptide 2 (36 aa)
MYHLHNHQGKLDSKITHRPTLPIHQPRTQQLDSSST*

Sequence

>CNT30558912
ATATAATTAAGGGGTTCCATGCATGTATCATCTCCACAATCACCAAGGAAAGCTTGATAGTAAAATTACACATCGACCGACCCTTCCGATCCATCAACCA
CGCACCCAACAGCTGGATAGTAGTAGCACATGACAGTCACAGGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTTCCGATG
CTGCGGAAGCTTGCGTGGCCATGGCCATCGGCTTCTTCGGGCGGAAGCTAAGCTGGG