Detailed information on CNT30558778


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676951Panicum halliiSetaria viridis47.3444.6393.58187forward
CNT30524410Panicum halliiSetaria italica41.0120.7291.98162forward
CNT30297025Panicum halliiTriticum aestivum15.1922.739560forward
CNT30438887Panicum halliiAegilops tauschii12.9122.1796.0851forward
CNT30663056Panicum halliiTriticum dicoccoides15.1924.399560forward
CNT30150882Panicum halliiBrachypodium distachyon21.5225.8495.2985forward
CNT30581942Panicum halliiEchinochloa crusgalli21.0117.8589.1683forward

Expression of CNT30558778

Peptides detected in this lncRNA

>peptide 1 (47 aa)
QNGFFPILIIYTHGTFFRPSRTLCFPVKPNAAAAALTGWASSRRRRR*

>peptide 2 (72 aa)
TKWFLPHLDNLHAWHILQTLTHTLFPGKTKRSSSSAHRLGVLSAAPEMTVSRVLPSRSRAPVCNHYVRWRHP*

Sequence

>CNT30558778
ACAAAATGGTTTCTTCCCCATCTTGATAATTTACACGCATGGCACATTCTTCAGACCCTCACGCACACTTTGTTTCCCGGTAAAACCAAACGCAGCAGCA
GCAGCGCTCACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGGTGTTGCCGTCCAGGAGCAGGGCGCCGGTCTGCAACCATTACGT
ACGGTGGCGCCATCCATGAGTTCAGGTTCAGGCTTCTAGTTTCAGAGATTGCAACTACTCTACCACTGGAATGTGAAATCTGTGTAAACCAATCTTGTGT
TCTATTCTTTTTTGGAAAACTTCAATTCTTCGGCACATTTGAGAAAGAAAAATTGCTACTGAAGTGTGAATATTCTGAGAGCTGATGATCAGGAC