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Detailed information on CNT30558388


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000458, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640023Panicum halliiNymphaea colorata94.8939.0994.541318reverse complement
CNT30550233Panicum halliiIpomoea triloba94.7446.6895.291316forward
CNT30619307Panicum halliiSesamum indicum89.2774.0392.821240forward
CNT30730599Panicum halliiCorchorus capsularis74.3795.395.451033forward
CNT30507933Panicum halliiNicotiana attenuata94.6764.6894.751315forward
CNT30163337Panicum halliiPistacia vera91.2291.5592.981267forward
CNT30383474Panicum halliiTriticum turgidum97.7780.595.071358forward
CNT30540266Panicum halliiBrassica napus89.3464.4393.881241forward
CNT3018165Panicum halliiZea mays68.9786.6297.08958forward
CNT30433935Panicum halliiPapaver somniferum94.8270.0994.461317forward
CNT30574469Panicum halliiVitis vinifera85.1764.5494.841183forward
CNT30583181Panicum halliiEchinochloa crusgalli85.5350.6896.461188forward
CNT30496898Panicum halliiDigitaria exilis98.9275.9593.31374forward
CNT30176196Panicum halliiVigna angularis87.1180.5193.311210reverse complement

Expression of CNT30558388

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGGISGERRPC*

>peptide 2 (98 aa)
MEQCRQGKSAKWIRNFGKRIGSEGWARGSRPRTRRLPSDCSSCSRGDCGPPRAGRGTDRERPSRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPCGC*

>peptide 3 (34 aa)
MSALPIIVKQNSPSLDCSPTNRERELGLDRRETG*

>peptide 4 (55 aa)
MPRHLISDAHEWINEVPTVPVYYPAKPQPREWAWRNQRGKKTLLSLTLVRLCEMT*

Sequence

>CNT30558388
ACCGTCCATGCTCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTAGCCAATGGAACAATGTAGGCAAGGGAAGTCAGCAAAATGGA
TCCGTAACTTCGGGAAGAGGATTGGCTCTGAGGGTTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGTCGGATTGCTCGAGCTGCTCCCGCGG
TGATTGCGGGCCGCCGCGTGCCGGTCGGGGGACGGACCGGGAACGGCCCTCTCGGGGGCCTTCCCCGGGCGTCGAACAACCAACTCAGAACTGGTACGGA
CAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTTGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTG
AAGAAATTCAACCAAGCGTGGGTAAACGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGAT
TAACGAGGTTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAATGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTG
ACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCTTCAGGCGCAAGTGAAATACCACTACTTTTAACGTTGTTTTACTTAT
TCCGTGGGTCGGAAGCGGGGCATTGCCCCTCCTTTTGGCTCCAAGGCCTAGCTCTGCTGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC
TGGGGTGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCATTTGAT
TCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGATCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGG
ATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCATCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTTTG
GATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTATCCTACTGATGACCGTGCCGCGATAGTAATTCAAC
CTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCC
TCTAAGTCAGAATCCAAGCTAGCAACCGGCGCCTGTGCCCGCCGCTCGCCCCGACCCACATTAGGGCGTTCGCGCCCCAAGGGCTCGTG