Detailed information on CNT30558331


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 1e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Panicum halliiOryza sativa56.6452.1185.5469forward
CNT30676635Panicum halliiSetaria viridis34.7882.7697.57288forward
CNT30631438Panicum halliiVigna unguiculata21.2626.5981.82176forward
CNT30487971Panicum halliiOlea europaea18.7229.8185.81155forward
CNT30122306Panicum halliiPhyscomitrium patens15.4644.4482.03128forward
CNT30287617Panicum halliiTriticum aestivum40.158.3588.86332forward
CNT30254596Panicum halliiAvena sativa49.7631.0785.68412forward
CNT30658759Panicum halliiTriticum dicoccoides51.4571.9687.56426forward
CNT30311914Panicum halliiCamelina sativa18.3624.685.53152forward
CNT30717839Panicum halliiMalus domestica golden30.3149.4179.28251forward
CNT30354596Panicum halliiLactuca sativa21.6216.1380.45179forward
CNT3053264Panicum halliiAmborella trichopoda18.7224.7680155forward
CNT30328300Panicum halliiAsparagus officinalis11.9633.2284.8599forward
CNT30150466Panicum halliiBrachypodium distachyon39.6196.7688.72328forward
CNT30101573Panicum halliiOryza rufipogon36.1135.386.29299forward
CNT30581271Panicum halliiEchinochloa crusgalli1828.1180.54149forward
CNT30498115Panicum halliiDigitaria exilis55.0757.587.5456forward

Expression of CNT30558331

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSFALSRSNTSFSIISAISFTSNFVSCRNTIISSNLFRNSGRKYCFNSSVTRLLILL*

>peptide 2 (41 aa)
MRLCLFLSIAFLLPHFQWKKYQGKLKRCQFSFPIIRSPTDL*

Sequence

>CNT30558331
CTTGAATAAGTTACATCCGTACACAACTGGGAGAATAAGTACAACAGTGCAAGCGATACCCGTGTCATCATGCTAGCAGAGCCCTAATGAAGTAATGATA
CATGTAATTGCAGGAAATTGAAAATTCCAAGTTTTTTCCAAAAACAAGGCAACTCAAGGTCTAAGCATACAGTGTGCTCGCTAAATGCGTCTCTGCCTAT
TCCTTTCCATAGCATTCCTACTGCCTCACTTCCAATGGAAAAAATACCAAGGAAAGCTAAAGCGATGTCAATTTAGTTTTCCCATCATCAGGAGCCCAAC
TGACTTGTAAAGAAGGCCATATATCGGACCAAAGATTTTTCGACCTGAATTAGGTACTGAGAGCAGGTTCCAGTGGCTCAGCAACACCACTCCCACCATT
CAGGACTACTACCTTACCTTCTGAATCCACGTCGACAATAGCAGAATCGCCTTCTTTCACCTCACCAGCCAGCATCTTCTCTGCCAGACTGTCTTCCAAG
AGCCTCATGATAGCACGGCGCAGAGGCCTGGCACCATAGCTCGGGTTGTAACCTTCATCAACAACCCTATCACGGAACCTCTCAGTGACTTGGAGATTAA
TGTCCTTCGCCTTGAGCCGATCAAATACTTCTTTCAGCATAATATCAGCAATCTCCTTCACCTCCAACTTTGTCAGCTGCCGGAACACAATCATCTCATC
CAATCTGTTCAGGAACTCTGGCCGGAAATACTGCTTCAACTCCTCTGTTACCAGGCTCTTGATCCTGTTGTAGCTGCTGTCCTTCTCTTCGTAGTCAAGG
TCAAATCCAATCTTGCGGCCTCCCTTCT