Detailed information on CNT30558183


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001148, E-value = 4e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529029Panicum halliiEucalyptus grandis22.782.8889.8359reverse complement
CNT30390237Panicum halliiTriticum turgidum83.019.9591.16215reverse complement
CNT30589320Panicum halliiMusa acuminata72.5938.6882.45188reverse complement
CNT30446760Panicum halliiSaccharum spontaneum98.0722.597.24254reverse complement
CNT3018049Panicum halliiZea mays98.077.6697.24254reverse complement
CNT30214788Panicum halliiHelianthus annuus22.3918.1891.3858reverse complement
CNT30689226Panicum halliiTriticum urartu83.411.6592.13216reverse complement
CNT30359977Panicum halliiLactuca sativa22.393.2591.3858reverse complement
CNT30103662Panicum halliiOryza rufipogon86.4981.1690.18224forward

Expression of CNT30558183

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KKKKGGNFLVNTRKKGFLHRDRQNNDFTLSAVGRKDTS*

Sequence

>CNT30558183
AAAAAAAAGAAAGGAGGAAATTTTCTAGTAAATACTAGAAAAAAGGGCTTTCTACATAGGGATCGTCAAAACAACGATTTTACCCTATCAGCTGTAGGAA
GGAAGGACACTTCATGAGAATCAAAATAGGAAGAAAGTAGAGCCTATACTACTCTATGGATAAAGCTGAAATTGATAGAGAAAACACCGTAAAGATCAAT
TAGTGAGCAACTGGGTCGATACAACTAAAAAAAACTGCTTCATTATACCACGATATGGG