Detailed information on CNT30557997


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674622Panicum halliiSetaria viridis19.8823.8498.9898forward
CNT30522694Panicum halliiSetaria italica26.1725.4986.82129forward
CNT30381356Panicum halliiManihot esculenta15.6226.4687.0177forward
CNT30188757Panicum halliiSecale cereale18.6620.7789.1392forward
CNT30225130Panicum halliiHordeum vulgare18.0521.0991.0189forward
CNT30441680Panicum halliiAegilops tauschii10.7525.610053forward
CNT3013982Panicum halliiZea mays17.4429.6691.8686forward
CNT30650534Panicum halliiRosa chinensis20.8911.0582.52103forward
CNT30363764Panicum halliiSorghum bicolor15.0126.6291.8974forward

Expression of CNT30557997

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRKKIPDDQTSKSKDQRVILEQEQQQQQQCLHVTSAARGR*

Sequence

>CNT30557997
GTTTGATTGACATCGGAACAGAGTTTTTTTTTTTTTGAAAATTAAGACAGAGTATTACCAATGCCGTTGGTTGCACAGGAGTGGGACACCAAAGAAGTAC
AGTAACATACGAAATATGATAGATCAAAACTGCAAATCTCTCAGCAGTTTCAGTCCAGACTCGAAAAGGGGCGGGGAGAAAGGATGAGAAAAAAGATACC
GGACGACCAAACTAGTAAAAGTAAAGATCAGCGCGTAATCCTGGAGCAGGAGCAGCAGCAGCAGCAGCAATGCTTGCATGTAACATCAGCAGCAAGAGGT
AGATGAGAGCACGGAGACAGACACTCCTCAACGTCCTCTTCTCTAAGCAGATGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGCG
GCGATCTCGTCGTTGGTGACGGTCTCGTCGTGCTGGGTGGAGATGAGGACGGTGTGGACGCGGACGGGGACCATGGCGCCACCCTCGTTGAGG