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Detailed information on CNT30557952


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 5e-170

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Panicum halliiSetaria viridis25.5227.9695.19208forward
CNT30640184Panicum halliiNymphaea colorata44.7948.2282.19365forward
CNT30547410Panicum halliiIpomoea triloba22.3334.2782.97182forward
CNT30512774Panicum halliiJuglans regia48.131.4182.4392forward
CNT30373037Panicum halliiArabidopsis thaliana39.6315.8682.66323forward
CNT3019595Panicum halliiCitrullus lanatus41.9661.6280.41342forward
CNT30728649Panicum halliiCorchorus capsularis23.5617.6384.9192forward
CNT3071371Panicum halliiQuercus suber30.9287.888.49252forward
CNT30405832Panicum halliiBeta vulgaris29.4529.9385.83240forward
CNT30636551Panicum halliiCapsicum annuum27.7334.2484.96226forward
CNT30192963Panicum halliiSecale cereale31.948.6989.23260forward
CNT30224330Panicum halliiHordeum vulgare35.2159.4285.02287forward
CNT30543621Panicum halliiBrassica napus18.5358.9888.74151forward
CNT30510528Panicum halliiSolanum lycopersicum49.5731.3783.42404forward
CNT30143750Panicum halliiMedicago truncatula20.7422.0681.07169forward
CNT30441049Panicum halliiAegilops tauschii13.1328.3192.52107forward
CNT30665536Panicum halliiTriticum dicoccoides46.7557.8186.88381forward
CNT30312884Panicum halliiCamelina sativa46.9937.8885.12383forward
CNT30263621Panicum halliiBrassica rapa46.7532.2187.93381forward
CNT30612508Panicum halliiArabis alpina50.6716.2785.47413forward
CNT30445994Panicum halliiSaccharum spontaneum52.2729.9294.13426forward
CNT301916Panicum halliiZea mays49.6999.5193.83405forward
CNT30212259Panicum halliiHelianthus annuus18.422.4983.33150forward
CNT30716253Panicum halliiMalus domestica golden51.5331.6785420forward
CNT30722731Panicum halliiTriticum spelta14.623.2989.08119forward
CNT30479087Panicum halliiArabidopsis halleri23.866.6786.6194forward
CNT30361348Panicum halliiSorghum bicolor51.4179.6693.56419forward
CNT30706279Panicum halliiPrunus avium40.8654.8684.38333forward
CNT3054398Panicum halliiAmborella trichopoda24.9129.5981.28203forward
CNT3024028Panicum halliiPopulus trichocarpa42.0946.4182.51343forward
CNT30119815Panicum halliiCitrus clementina12.2721.7990100forward

Expression of CNT30557952

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MVAEPVFLVVHFFVAGSKKFSPQSLSIILVSSTPNLDAYILAKLVRVKAQPCRPAEKATVPFSG*

>peptide 2 (52 aa)
NSTLDTLDIQILLLARHIVGTHDTNLHTSSNLPREDTTKGKEPPLVRCWNHL*

>peptide 3 (49 aa)
MIRTFIPVATFPEKTRPKAKNRPLSDAGIIFETYSMRGPSGSQFLMAVA*

Sequence

>CNT30557952
ATAACAGTACGCTGGACACTCTTGACATACAGATCCTTCTTCTGGCCAGGCACATAGTTGGGACCCATGATACGAACCTTCATACCAGTAGCAACCTTCC
CAGAGAAGACACGACCAAAGGCAAAGAACCGCCCCTTGTCAGATGCTGGAATCATCTTTGAAACATACAGCATGAGAGGACCCTCCGGATCACAGTTCCT
GATGGCAGTAGCATAGATATCATCAAGGGGTCCCTCATACAGGTTCTCCACACGATACCTCTGTGCCTTTGCTGGGGAAGGAAGGTGGAATATCATCATC
TCAAGAAGTGCAGTACTAGCTGGAAGCCAGGTTTGCATAACACGCTTCATCAAAGCCTTGCCAACCAATTCCTTCTCATCAGCCTTCATGGTAGCAGAGC
CTGTGTTCTTGGTGGTCCACTTCTTCGTGGCTGGGTCAAAGAAGTTCTCGCCCCAGAGCCTCTCCATCATCTTAGTTTCATCAACTCCAAACTTGGATGC
ATACATCTTGGCAAAGTTGGTGAGGGTGAAGGCCCAGCCGTGCAGACCAGCAGAGAAAGCAACAGTTCCCTTCTCCGGGTAGACTTGGACATCACCAAGG
AGCTTATCTTCATATGTTGCCATAATGACATTGGCATTCTCAATGACACGGGAGAAAGTCTGGTAGGCTTCCTCACCCTCAACCTGAAGCTCAAGGAAGC
ACCTGTCCATCTTGTTCACAGTAAGAACTGGCCTAATCCTCTCACCAAGAGCCTGGCGGAGCACAGTCTCAGTTTGCACACAGACACCTTCAATACAGTC
AACCACCACTAGAGC