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Detailed information on CNT30557814

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3G0|RR3_SACHY, E-value = 1e-98

BLAST vs NONCODE:
NONORUT000960, E-value = 2e-63

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693928	Panicum hallii	Oryza sativa	48.36	11.96	89.6	500	forward
CNT30405603	Panicum hallii	Beta vulgaris	16.05	21.73	89.76	166	forward
CNT3048584	Panicum hallii	Prunus dulcis	13.54	43.48	89.29	140	forward
CNT30185636	Panicum hallii	Secale cereale	48.45	32.32	89.82	501	forward
CNT30294378	Panicum hallii	Triticum aestivum	48.45	24.55	89.62	501	forward
CNT30224357	Panicum hallii	Hordeum vulgare	24.47	16.75	92.09	253	forward
CNT30540371	Panicum hallii	Brassica napus	15.28	26.16	87.34	158	forward
CNT30555950	Panicum hallii	Oryza glaberrima	48.36	33	89.6	500	forward
CNT30442098	Panicum hallii	Aegilops tauschii	46.13	72.05	90.15	477	forward
CNT30243771	Panicum hallii	Avena sativa	47.97	43.02	90.93	496	forward
CNT30666800	Panicum hallii	Triticum dicoccoides	20.7	90.3	95.33	214	forward
CNT30598237	Panicum hallii	Fraxinus excelsior	12.09	20.33	82.4	125	forward
CNT30447572	Panicum hallii	Saccharum spontaneum	37.04	22.25	98.17	383	forward
CNT30134355	Panicum hallii	Lolium perenne	20.5	8.42	93.4	212	forward
CNT3018340	Panicum hallii	Zea mays	38.59	29.95	97.24	399	forward
CNT30689030	Panicum hallii	Triticum urartu	48.45	11.06	89.62	501	forward
CNT30620547	Panicum hallii	Cajanus cajan	13.83	45.54	86.01	143	forward
CNT30371107	Panicum hallii	Oryza glumipatula	33.37	81.75	87.54	345	forward
CNT30585636	Panicum hallii	Echinochloa crusgalli	38.68	6.97	97.25	400	forward
CNT30604560	Panicum hallii	Oryza punctata	24.47	25.12	93.28	253	forward
CNT30724130	Panicum hallii	Lupinus angustifolius	14.8	45.81	86.27	153	forward

Expression of CNT30557814

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLKDLSIFIKSYRKRYIEFFLFLGIFGKIRLLSFLFYHREEWEDMVSYSSSTNIQIFTPNTP*

>peptide 2 (63 aa)
SSSCFYLSCGDPSGFKYLKSISTKTNTIASAGFSLHSSSMLFTKSSSFGVIHSNYVKRFINFH*

>peptide 3 (35 aa)
MVILGCTKSETEWIYFLSHIFLFYFFFLLGIEILD*

>peptide 4 (39 aa)
MHSARAISFPARRPAILILTPFMSAFLVNSMAFFIAFSE*

Sequence

>CNT30557814
GCTCTTCATCCTGCTTCTATCTGTCTTGCGGTGATCCAAGCGGGTTCAAGTACTTGAAGAGCATATCTACCAAAACAAATACGATTGCCTCGGCAGGATT
TTCCCTTCATTCTTCCTCTATGTTGTTTACGAAATCTAGTTCTTTTGGGGTTATACATAGCAATTATGTTAAAAGATTTATCAATTTTCATTAAATCTTA
TAGAAAGAGGTATATAGAATTTTTTCTTTTTTTAGGGATTTTTGGAAAAATAAGGTTGTTGTCTTTTTTATTCTATCATAGGGAAGAATGGGAAGACATG
GTTAGTTATTCTTCTTCTACGAATATCCAAATTTTTACACCTAATACTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTG
TTTGGAGGGGCAGTCTGCCCTTTTTAATGCATTCGGCACGTGCAATTTCTTTCCCTGCTAGACGACCCGCAATTTTGATTTTGACTCCCTTTATGTCTGC
TTTTTTAGTTAATTCAATGGCTTTTTTCATTGCTTTTTCGGAATGAAACTCTATTTTTTAATGGGAAAGCTATATATTCTGCAAGAATATTAGGTTTTCT
ATAAGGTTCTTTAACCTTTTCGATAGCAATATTAAGTCTCTGGTTTACAGAATTAACTTCCTTTTGGAGATTGTTCTCTAATTCTTCGATTGCACCCTTT
TTCTTTAATAAATTGGGGAATCCAATATGGATTATGACGTGGATTGTATCGATTTCTTTTTGAATTTCTATATGTGTAATTACTTCAGAACTTGAGTCTG
ATTCTATTTTTCTATTCAAGCCTTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAATTCCGTATTTTTTTATCTTCCTGTAAACCTTCAGAATAATT
TTTTGGTTGTGCGAACCAAAAGGAATGGTGATTTTGGGTTGTACCAAGTCTGAAACCGAGTGGATTTATTTTTTATCCCATATTTTTCTATTCTATTTCT
TTTTTTTATTGGGAATCGAAATCTTGGATTGATC