Detailed information on CNT30557683


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Panicum halliiOryza sativa36.5750.5785.61132forward
CNT30675139Panicum halliiSetaria viridis18.2820.3795.4566forward
CNT30523073Panicum halliiSetaria italica36.0118.1397.69130forward
CNT30552300Panicum halliiOryza glaberrima36.5720.0985.61132forward
CNT30249419Panicum halliiAvena sativa20.57.5389.1974reverse complement
CNT30455220Panicum halliiSaccharum spontaneum40.7219.3289.8147forward
CNT3014036Panicum halliiZea mays36.0124.4893.08130forward
CNT30363793Panicum halliiSorghum bicolor33.2425.2690.83120forward
CNT30595494Panicum halliiOryza meridionalis36.5720.1886.36132forward
CNT30369290Panicum halliiOryza glumipatula36.5728.7685.61132forward
CNT3099710Panicum halliiOryza rufipogon36.5720.7285.61132forward
CNT30574579Panicum halliiOryza barthii36.5727.7985.61132forward
CNT30497518Panicum halliiDigitaria exilis35.7320.8197.67129forward
CNT30115620Panicum halliiOryza nivara35.7323.8987.6129forward

Expression of CNT30557683

Peptides detected in this lncRNA

>peptide 1 (82 aa)
FSLRSWNSPVPVSTSSSTLVSRTTKWPEPPWAWWPWWWWRPWLPVRDALSTSSNFSLTTCCWTPPWRPKPAGLATDLTSSEQ*

>peptide 2 (45 aa)
LLALVELAGAGVDLLLDLGLAHHEVAGAAVGVVAVVVVAAVAAGA*

>peptide 3 (56 aa)
SPCARGTRRCRCRPPPRPWSRAPRSGRSRRGRGGRGGGGGRGCRCVTPCRPPRTSP*

Sequence

>CNT30557683
TTCTCCTTGCGCTCGTGGAACTCGCCGGTGCCGGTGTCGACCTCCTCCTCGACCTTGGTCTCGCGCACCACGAAGTGGCCGGAGCCGCCGTGGGCGTGGT
GGCCGTGGTGGTGGTGGCGGCCGTGGCTGCCGGTGCGTGACGCCCTGTCGACCTCCTCGAACTTCTCCCTGACGACGTGCTGCTGGACGCCGCCGTGGCG
GCCGAAGCCGGCCGGGCTGGCCACCGACCTCACCTCCTCGGAGCAGTAGTCCACCTCCTGGTAGTGAGCCATGGTGATGGTTGGTCTACCTGCGTGCAGT
GCCTGTGCTTACAAGTGTTTGTGAATTGCGTGAGATTTGTGTGCTGGATACTAGGGCTGGG