« Back to Panicum hallii search


Detailed information on CNT30557628


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000045, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Panicum halliiOryza sativa66.7958.7789.25372forward
CNT30671720Panicum halliiSetaria viridis51.7164.1492.71288forward
CNT30522940Panicum halliiSetaria italica65.8952.1395.91367forward
CNT30315505Panicum halliiCorylus avellana34.6542.2386.53193forward
CNT30518188Panicum halliiJuglans regia31.0619.6484.39173forward
CNT30702570Panicum halliiQuercus lobata21.924.488.52122forward
CNT30618877Panicum halliiSesamum indicum20.4714.4988.6114forward
CNT30379403Panicum halliiManihot esculenta20.8320.6482.76116forward
CNT30526697Panicum halliiPhaseolus vulgaris21.3645.2587.39119forward
CNT30632073Panicum halliiVigna unguiculata21.3615.8287.39119forward
CNT30196132Panicum halliiPisum sativum21.3625.1186.55119forward
CNT30163372Panicum halliiPistacia vera20.8320.1482.76116forward
CNT30179138Panicum halliiSecale cereale39.8627.5194.59222forward
CNT30301816Panicum halliiTriticum aestivum51.8941.5890.31289forward
CNT30220711Panicum halliiHordeum vulgare54.2229.1587.42302forward
CNT30397538Panicum halliiTriticum turgidum54.449.8488.78303forward
CNT30565715Panicum halliiActinidia chinensis34.4724.4686.46192forward
CNT30586986Panicum halliiMusa acuminata29.2646.0588.34163forward
CNT3086649Panicum halliiVigna radiata21.3615.9583.19119forward
CNT30552407Panicum halliiOryza glaberrima66.0753.0390.76368forward
CNT30171046Panicum halliiTrifolium pratense20.8332.6881.9116forward
CNT30439348Panicum halliiAegilops tauschii65.3563.0892.86364forward
CNT30243491Panicum halliiAvena sativa64.4540.5291.92359forward
CNT30666604Panicum halliiTriticum dicoccoides51.1754.0889.82285forward
CNT30451774Panicum halliiSaccharum spontaneum66.6142.0695.42371forward
CNT30130711Panicum halliiLolium perenne30.522597.06170forward
CNT3015998Panicum halliiZea mays41.4759.8492.21231forward
CNT30606042Panicum halliiGossypium raimondii25.3146.2383.69141forward
CNT30231835Panicum halliiAnanas comosus27.4723.5490.2153forward
CNT30205622Panicum halliiHelianthus annuus11.1322.9688.7162forward
CNT30129800Panicum halliiCorymbia citriodora31.0621.4986.71173forward
CNT30684130Panicum halliiTriticum urartu65.3550.2192.58364forward
CNT30722188Panicum halliiTriticum spelta51.1741.7389.82285forward
CNT30346527Panicum halliiEragrostis tef28.976.398.76161forward
CNT30363502Panicum halliiSorghum bicolor67.1556.0793.58374forward
CNT30619778Panicum halliiCajanus cajan21.918.4388.52122forward
CNT30596761Panicum halliiOryza meridionalis66.6146.9686.79371forward
CNT30360466Panicum halliiLactuca sativa22.4429.6986.4125forward
CNT30369169Panicum halliiOryza glumipatula64.9963.1890.88362forward
CNT30570929Panicum halliiVitis vinifera20.8317.2984.48116forward
CNT3052765Panicum halliiAmborella trichopoda21.3623.4387.39119forward
CNT30108786Panicum halliiOryza longistaminata47.227.7783.65263forward
CNT30327286Panicum halliiAsparagus officinalis31.0619.1487.28173forward
CNT30149313Panicum halliiBrachypodium distachyon22.6236.194.44126forward
CNT30103076Panicum halliiOryza rufipogon54.450.2587.13303forward
CNT30574682Panicum halliiOryza barthii65.5353.3690.68365forward
CNT30496069Panicum halliiDigitaria exilis66.6146.4991.11371forward
CNT30176425Panicum halliiVigna angularis21.3614.286.55119forward
CNT3065708Panicum halliiSelaginella moellendorffii21.3634.2983.19119forward
CNT30114697Panicum halliiEutrema salsugineum21.3619.4181.51119forward

Expression of CNT30557628

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMNEFMMDMALEEMPMSGCTCFSTLKM*

Sequence

>CNT30557628
CAGAGAGATACAATCGAGAGCTGACGCTGAATTGAACAAGAGTTAAACAAGCACCACCAACATTACTTCAGTCAGGAGCCACAACACGTAACTACACCAT
CCGTACTAGCCCAATCCGGCGAACTAGCACCACTACCAGGAGCAACACGCCACAAAGAGCAGAGGGGAAAGCCTAGCATCTACGACGAGGTGATGGTGGG
CTTCTTGTTGTAGCGCGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATGATGGACATGGCCTTGGAGGAGATG
CCGATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACTTCTTCGCCTTCTTCTTCCCCTTCTTGCCCTCGCCGC
CCTCCTTGCCGGCGGACTTGCCCGCGGGGAGCCGCTTCTCGGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCTTCTCCGCCGCGGGCTCCTCCTC
CGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGGGCCATCGATGCGGCTGC