Detailed information on CNT30557571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193268Panicum halliiSecale cereale93.6299.9498.591775forward
CNT30219940Panicum halliiHordeum vulgare94.5774.1897.491793forward
CNT30663154Panicum halliiTriticum dicoccoides93.7299.7297.071777forward
CNT30585666Panicum halliiEchinochloa crusgalli93.35100.1199.491770reverse complement

Expression of CNT30557571

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MDFSRRRGRRTASVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 2 (44 aa)
MRPSRKSGFVARISSRITTVIRVAHTIKQTITDLMSHSQFHSSN*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 4 (41 aa)
ETLLRLLLPLNDKVQWTSRDVGGGEPPPSPRSEHFTGPFNR*

>peptide 5 (37 aa)
MTTGRINQVARPPRQADNGFYTGHQPGRLSFIQRFRL*

>peptide 6 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

>peptide 7 (30 aa)
MMRRRHEGRAIRRVIMNHRISEQSPRQPFI*

>peptide 8 (94 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGRVGRCSPVRRTGRPGPKSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR*

>peptide 9 (43 aa)
MIRFNGLLATSGAANRLRRRDPNTSPDHSIGRSDGRCVQRAGT*

Sequence

>CNT30557571
CGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCCTCCGTCGCCGCGATCCGA
ACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCAT
TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAAT
ACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAA
GAAGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAA
CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTA
AGCCGCAGGCTCCACGCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCA
TAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCA
ACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAA
TGCCCCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCG
ATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGTCGAG
TAGGTCGGTGCTCGCCAGTCAGGCGGACCGGCCGACCCGGCCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTG
GAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACACTAACGCGCCCGG
TATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC
CGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCC
GGCACGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGGATCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAA
GTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAG
TTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCACGTCCTCCTC
GACAAGCCGACAACGGCTTCTACACTGGGCATCAACCGGGTCGACTGTCGTTTATTCAGAGGTTCCGACTTTGAGAGGAAAGAGGAGCCGAAGCAG