Detailed information on CNT30557534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407229Panicum halliiBeta vulgaris17.9631.8788.07109forward
CNT30632102Panicum halliiVigna unguiculata26.5224.3286.96161forward
CNT3090242Panicum halliiSolanum tuberosum26.1913.686.16159forward
CNT3085551Panicum halliiVigna radiata23.0661.486.43140forward
CNT30435040Panicum halliiAegilops tauschii27.0218.2496.34164forward
CNT30131654Panicum halliiLolium perenne28.3458.594.19172forward
CNT30361296Panicum halliiSorghum bicolor20.5916.4382.4125forward
CNT30419844Panicum halliiPapaver somniferum26.5226.9786.96161forward
CNT3057915Panicum halliiAmborella trichopoda10.3826.1492.0663reverse complement

Expression of CNT30557534

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGNVAPIPNQRATAVPIKKTVIATGRRNGFWNLLTFSRKVLSISNHNSRV*

>peptide 2 (46 aa)
MQGASRLNESTRKIPKKDLKLRIYQWVMLLQYLTKELLQYRLKKRS*

Sequence

>CNT30557534
GGAATTTAGTGGAGGACACTGCAACTACCACAATAAATTATACACTTCGTGAAACCTAACATATGATTCTTATCGAGATACAGTTTTCGTATGGAAGATG
GAAAACTGATATGGGACACTCTAGAGAAGCATCTCCCAACTGATTTACCTAAGAACAAGTTCTCGCTTTAAATCTATTGCAATTTTTCCTCTTTTTTTTT
GAGTTAGAATAAAAAGAAAAAAAGCAATTTTGCATCTTTGGCACAATCTATATTTTCGCGAAATGGATCATAATAAAATAGATTTTAGGTATCTAGGGAA
GATTCACTTGGAAGTAACTATTTCCTAGATACCCATGCAGGGGGCTTCGCGGTTGAATGAATCAACTCGAAAAATCCCTAAAAAAGACCTAAAATTAAGG
ATTTATCAATGGGTAATGTTGCTCCAATACCTAACCAAAGAGCTACTGCAGTACCGATTAAAAAAACGGTCATAGCTACTGGGCGACGAAATGGATTTTG
GAATTTATTGACATTCTCTAGAAAGGTACTGTCAATAAGCAATCATAACTCTCGTGTATAATGCTGTTATCTTGAATCTTTTGGCGATTCAACAAATCGG
TGAGGAT