Detailed information on CNT30557434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000298, E-value = 4e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690151Panicum halliiOryza sativa32.4113.9183.81105forward
CNT30596709Panicum halliiOryza meridionalis32.4120.8383.81105forward
CNT30108677Panicum halliiOryza longistaminata32.414.2883.81105reverse complement
CNT30103523Panicum halliiOryza rufipogon29.6316.8185.4296reverse complement
CNT30117997Panicum halliiOryza nivara32.416.8383.81105forward

Expression of CNT30557434

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLFLFLGTWDMNQIGGRANTTRKRVWMIKSDHTSSDLQEGATSEGHNS*

>peptide 2 (97 aa)
DEDIPPNDRPMLTTQQGPMTRARARELNYQVNSFLAVHKPSSMNGVLLNSCDAFLILRNLGHEPDWRESKHDKKASVDDQIGPYQFGPPGRGNFGRP*

Sequence

>CNT30557434
TGATGAGGACATCCCTCCCAACGATAGACCCATGCTTACTACGCAGCAAGGACCAATGACAAGAGCTCGTGCACGAGAGCTAAATTATCAAGTAAACTCG
TTCCTCGCTGTCCATAAACCATCATCCATGAATGGGGTACTACTAAATTCTTGTGATGCTTTTCTTATTCTTAGGAACTTGGGACATGAACCAGATTGGA
GGGAGAGCAAACACGACAAGAAAGCGAGTGTGGATGATCAAATCGGACCATACCAGTTCGGACCTCCAGGAAGGGGCAACTTCGGAAGGCCATAACTCTT
AGCTCCGAATATTGTTTGAAGCCC