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Detailed information on CNT30557406


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENY0|PSBC_SACOF, E-value = 9e-65

BLAST vs NONCODE:
NONCSAT000472, E-value = 2e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Panicum halliiOryza sativa89.3426.7995.76377forward
CNT30730376Panicum halliiCorchorus capsularis50.7153.6387.38214forward
CNT30196209Panicum halliiPisum sativum22.7517.9490.6296forward
CNT3090620Panicum halliiSolanum tuberosum20.145.687.0685forward
CNT30300556Panicum halliiTriticum aestivum88.6321.8895.45374forward
CNT30539896Panicum halliiBrassica napus88.8621.5188.27375forward
CNT30236148Panicum halliiBrassica oleracea88.8624.4188.27375forward
CNT30441515Panicum halliiAegilops tauschii84.3655.3795.51356forward
CNT30628236Panicum halliiDaucus carota53.3220.788.89225forward
CNT30361727Panicum halliiSorghum bicolor68.0194.4196.52287forward
CNT30425595Panicum halliiPapaver somniferum88.3963.7689.81373forward
CNT30109402Panicum halliiOryza longistaminata89.3428.6396.55377forward
CNT30148380Panicum halliiBrachypodium distachyon81.2825.2995.63343forward
CNT30100129Panicum halliiOryza rufipogon89.3435.996.55377forward
CNT30116897Panicum halliiOryza nivara44.5539.1795.74188forward

Expression of CNT30557406

Peptides detected in this lncRNA

>peptide 1 (56 aa)
DPEQKKSGTSRNKKILVKRGHVKNRFQITINSLFKACCSSSGSSCMPQMAHKKEES*

>peptide 2 (56 aa)
MEFKEPKGAWVIYSVERRSCQGWMSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPK

>peptide 3 (29 aa)
MGHIFCRTSFLPRLDVFFQPTQVQTVRAP*

Sequence

>CNT30557406
CCGACCCAGAACAGAAAAAAAGTGGAACAAGTAGAAATAAAAAAATCTTAGTTAAGAGGGGTCATGTAAAGAATAGGTTCCAAATCACGATCAATTCCCT
TTTCAAAGCCTGCTGCAGCAGCTCGGGCTCTTCCTGCATGCCACAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGGGAAGTCGCTAACCAACT
TCTAGGAGAGACATAATTAACTGCATTGATCTCAGTAGCTACGCCACCCATGGAATTTAAAGAGCCTAAAGGAGCATGGGTCATATATTCTGTCGAACGT
CGTTCTTGCCAAGGTTGGATGTCTTTTTTCAACCTACTCAAGTCCAAACCGTTAGGGCCCCTTAGAGGTTCTAACCACGGAGCACGAAGGTCCCAAAAAC
GCATAGTTTCCCCTCCAAAAAT