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Detailed information on CNT30557400


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-11

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Panicum halliiSetaria viridis46.1455.4897.95633reverse complement
CNT30524649Panicum halliiSetaria italica45.3418.8797.59622forward
CNT30641383Panicum halliiNymphaea colorata46.1420.2695.1633forward
CNT30550219Panicum halliiIpomoea triloba47.8115.1197.1656forward
CNT30702366Panicum halliiQuercus lobata46.1463.5596.52633reverse complement
CNT30378673Panicum halliiArabidopsis thaliana44.8349.3296.42615reverse complement
CNT30618996Panicum halliiSesamum indicum46.3613.3895.44636forward
CNT30283003Panicum halliiChenopodium quinoa46.0666.1897.47632reverse complement
CNT3020470Panicum halliiCitrullus lanatus24.5662.5296.14337reverse complement
CNT30730494Panicum halliiCorchorus capsularis18.0828.1881.45248forward
CNT30406993Panicum halliiBeta vulgaris16.6258.9180.7228reverse complement
CNT30632346Panicum halliiVigna unguiculata47.323.296.76649forward
CNT30506406Panicum halliiNicotiana attenuata47.8125.6497.1656reverse complement
CNT30712072Panicum halliiGlycine max19.7542.7493.73271forward
CNT30162096Panicum halliiPistacia vera9.1142.0999.2125reverse complement
CNT30637481Panicum halliiCapsicum annuum21.2865.1895.55292forward
CNT3089926Panicum halliiSolanum tuberosum25.0715.5596.22344reverse complement
CNT30185187Panicum halliiSecale cereale47.8118.5598.02656forward
CNT30299053Panicum halliiTriticum aestivum47.8118.3198.17656forward
CNT30221833Panicum halliiHordeum vulgare46.7246.9696.26641forward
CNT30389173Panicum halliiTriticum turgidum47.8120.4798.32656forward
CNT30569655Panicum halliiActinidia chinensis47.9618.4895.9658forward
CNT30543266Panicum halliiBrassica napus42.1321.396.89578forward
CNT30508923Panicum halliiSolanum lycopersicum21.9490.1296.01301forward
CNT30554477Panicum halliiOryza glaberrima27.9953.1197.66384reverse complement
CNT30147396Panicum halliiMedicago truncatula47.321.8296.92649forward
CNT30441199Panicum halliiAegilops tauschii46.7264.5597.66641forward
CNT30258490Panicum halliiAvena sativa26.6850.6996.99366forward
CNT30670388Panicum halliiTriticum dicoccoides47.6723.3297.86654forward
CNT30140161Panicum halliiLolium perenne47.8119.2798.17656forward
CNT3017954Panicum halliiZea mays47.8117.3197.71656forward
CNT30605146Panicum halliiGossypium raimondii47.342.596.61649reverse complement
CNT30216578Panicum halliiKalanchoe fedtschenkoi47.8119.6996.49656forward
CNT3067980Panicum halliiLeersia perrieri11.7353.4995.03161reverse complement
CNT30655407Panicum halliiRosa chinensis47.319.4197.23649forward
CNT30202530Panicum halliiHelianthus annuus42.1378.8595.85578forward
CNT30715685Panicum halliiMalus domestica golden21.0623.7588.58289reverse complement
CNT30628241Panicum halliiDaucus carota47.8124.397.26656reverse complement
CNT30688989Panicum halliiTriticum urartu46.7932.6498.13642forward
CNT30721631Panicum halliiTriticum spelta47.8118.8997.71656forward
CNT30346087Panicum halliiEragrostis tef47.8163.4498.17656forward
CNT30595568Panicum halliiOryza meridionalis11.0839.1898.03152reverse complement
CNT30359771Panicum halliiLactuca sativa47.8162.7897.1656forward
CNT30369921Panicum halliiOryza glumipatula16.5598.797.36227forward
CNT30484250Panicum halliiChara braunii13.7826.0392.59189reverse complement
CNT30429739Panicum halliiPapaver somniferum46.3619.7793.71636forward
CNT30571858Panicum halliiVitis vinifera47.318.7297.23649reverse complement
CNT3056076Panicum halliiAmborella trichopoda46.2127.5492.27634forward
CNT30320583Panicum halliiAsparagus officinalis19.2424.0797.73264forward
CNT30118993Panicum halliiCitrus clementina19.8377.2792.28272forward
CNT3038324Panicum halliiCucumis melo46.1433.5696.68633reverse complement
CNT30331625Panicum halliiDioscorea rotundata17.0673.5895.73234forward
CNT30151167Panicum halliiBrachypodium distachyon8.6720.3898.32119reverse complement
CNT3099709Panicum halliiOryza rufipogon27.0417.0497.84371forward
CNT30499372Panicum halliiDigitaria exilis47.8119.398.17656forward
CNT30603680Panicum halliiOryza punctata49.9317.3598.1685forward
CNT3039925Panicum halliiMarchantia polymorpha23.9166.1393.6328forward

Expression of CNT30557400

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MESFGTSMSTHHILGLKKVPRVWLFADESGT*

>peptide 2 (32 aa)
MKVVRELGLERRETVRFLSTVGVKGRTVRSQP*

>peptide 3 (47 aa)
MTNLERPLFRLRMPNRRTDHSRGGGGGGGGRDTARWVVYLGRMPPKE*

Sequence

>CNT30557400
TGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAA
CAAGTAGTGTATACTAGGGTGCGTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGA
TTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACATGATGTATAGAGTCTGACACCTGCCCGGT
GCTGGAAGGTCAGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAATGGCGGCAGTAACTCTAACTGTCCTATGGTAGCGAAATTCCTTGTC
GCATAAGTAGTGACCTGCACAAATGGTGTAACGACTGCCCCACTGTCTCCGACATGGACCGGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAAC
GGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAATGACCA
ATCTTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGCGGGGGGGGGGGGGGGGGGGCGGGGGGCGGGACACTGCGAGGTG
GGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGTTCAAGCGTTGATTCTGCTCATGAGCGTAATGGTATAAGCCTG
CCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACG
CCGGGGATAATAGGCTGATGACTCCCAAGAGCTCTTATCGATGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCTTGGGGTTGAAGAAGGTCCCA
AGGGTTTGGTTGTTCGCTGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACT
GTGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTTGTCACGCCAATAGCATCACCGGGCAGCTAAGTTGGTATGGA
AGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGAGAGAGGTGTAAGCACCGCGAGGTGT
GAAGCGATCTCGTACTAAACGAATGGAACTTTCCAACCTTCGAGAAAAGGTCCCATCCTTCAATATCATGAT