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Detailed information on CNT30557320


BLAST search results

BLAST vs Swiss-Prot:
sp|P08834|NU1M_CITLA, E-value = 5e-38

BLAST vs NONCODE:
NONORUT000338, E-value = 8e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Panicum halliiOryza sativa95.0515.398.82422forward
CNT30501657Panicum halliiCoffea canephora86.497.8191.93384forward
CNT30187493Panicum halliiSecale cereale89.8687.8999399forward
CNT30220178Panicum halliiHordeum vulgare30.415.4699.26135forward
CNT30401101Panicum halliiTriticum turgidum95.0534.6898.82422forward
CNT30592620Panicum halliiMusa acuminata93.2418.2191.06414forward
CNT30437037Panicum halliiAegilops tauschii65.3283.8298.62290forward
CNT30664530Panicum halliiTriticum dicoccoides80.6310099.44358forward
CNT30598800Panicum halliiFraxinus excelsior70.7284.4192.99314forward
CNT30228621Panicum halliiAnanas comosus65.0969.4796.19289reverse complement
CNT30207841Panicum halliiHelianthus annuus87.3914.4889.69388forward
CNT30687453Panicum halliiTriticum urartu95.057.8997.39422forward
CNT30480890Panicum halliiArabidopsis halleri66.4488.5993.22295forward
CNT30354619Panicum halliiLactuca sativa86.0422.9391.36382forward
CNT30574571Panicum halliiVitis vinifera56.314.0691.6250forward
CNT3052251Panicum halliiAmborella trichopoda30.412.392.59135forward
CNT3099667Panicum halliiOryza rufipogon64.8612.5698.61288forward
CNT30115707Panicum halliiOryza nivara95.059.6998.82422forward
CNT30335348Panicum halliiCynara cardunculus78.3896.1391.09348forward

Expression of CNT30557320

Peptides detected in this lncRNA

>peptide 1 (54 aa)
ARLVSARRGIRNITNTGNKGIPDHICFCAMTISLELQGPTHISTVIRIRPIETS*

>peptide 2 (58 aa)
MNRTSTSSVTPTALTALYPNPTCSGPGSSRIFSSVSGPWKLGGIRLGLIGNSISFFPS*

Sequence

>CNT30557320
GCTCGATTAGTTTCTGCTAGACGAGGAATAAGGAACATAACCAATACGGGGAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCAC
TCGAATTACAGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCAATAGAGACTTCATAAGAGACCATTTGAGCTGCAGATCGTAATGCTCCTAG
AAAGGCATATTTCGAATATAGAGGACGTTCCCAACAATCCACGAGAATATCATACCCAACTATGAACCGTACGAGCACATCCTCTGTCACCCCCACCGCG
CTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCTGGGTCCTCCCGCATCTTTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGGGTATCCGCTTGG
GACTGATAGGAAACAGCATATCTTTTTTTCCCTCCTGACCCCTA