Detailed information on CNT30557231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30459719Panicum halliiSaccharum spontaneum5.4333.0786.7583forward

Expression of CNT30557231

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFYCYAALFFLFASNRWLYIDQIYSDRSAIVEDMFTFFYHDY*

>peptide 2 (45 aa)
MQHCFFFLQAIDGCILTKFIATEVLLLKICLLFSIMIISECCLTHL

>peptide 3 (67 aa)
DDPPPSSTRAVFEIPHPTPRRPVAPPPDPIVPHPGTPPAAGSCRATRHPTPSGAGCGAAAAGVLVVA*

>peptide 4 (74 aa)
TTHPRPPPVQFSKSRTPPPDAPSRRRRIPSSPTQAPLPPPVPVAPLAIRRRRGQVVVRPPRGSWLSRDRPRPPG*

>peptide 5 (91 aa)
RRPTPVLHPCSFRNPAPHPPTPRRAAAGSHRPPPRHPSRRRFLSRHSPSDAVGGRLWCGRRGGPGCRVTARARRGEVVAAAGKASDLDAHH*

>peptide 6 (29 aa)
MWLVGSRRAALYRRGGGRRGTNAKVRRVP*

Sequence

>CNT30557231
CGACGACCCACCCCCGTCCTCCACCCGTGCAGTTTTCGAAATCCCGCACCCCACCCCCCGACGCCCCGTCGCGCCGCCGCCGGATCCCATCGTCCCCCAC
CCAGGCACCCCTCCCGCCGCCGGTTCCTGTCGCGCCACTCGCCATCCGACGCCGTCGGGGGCAGGTTGTGGTGCGGCCGCCGCGGGGGTCCTGGTTGTCG
CGTGACCGCCCGCGCCCGCCGGGGTGAGGTGGTCGCCGCCGCCGGGAAGGCTTCCGACCTCGACGCGCACCATTGACCGCCCCCCCCCCTCCCCCTCCTG
TCCCGGTGGTGCTTCTAGCCGACCGCCGTCAGGGACTGGCTGCCAGCCTGCCACGCACCTCCTGATCAGTACCTGCCGCCGCCGTTGCCGTCGACCGCCG
GCCGGATTCCAGCTGCGATCCGCGCGGGAACTCATCCATCGGCAACAAGTTGATTCCATGGCGGATCCGATTTAGTTCCCCATGGTGCCGGGGGCAATAC
AAGGTCAAGCTCGCAGGATCTGAAGCGGTCGCCGCCCTCTCCCTCCGAGATTTCTCATTCGACGCGCTTGTCACGTTTGGCGGTGGAGCCCTGATCTCTT
TTGACTGTGGAGATCGAATTTCTATGCTGGTTAATTGCAGCCTTGCAGGCAACAAAGCATGAGAACACCAGGATCGATGGTCATGTGGCCGATCACAGCC
GAGACAACACCGCCGTCGTCGTGGCGTTGATATCCATTAGCTGGGTGCAGGAGAGGTTGCCGAGGAGCAGCTTCTGATGTGCCTCCTTCTGTCCAGGCAG
GATTGATCTCGTCCGACTCGGTCGTTGGACCGAGTTGGAGTCCTTGATCGCGCCCTGATCGGGGGCGCCCAACCGAGATGTGGTTGGTGGGCTCTCGTCG
CGCAGCGCTATATAGAAGAGGTGGGGGCCGCAGGGGCACAAATGCCAAAGTTCGCCGTGTCCCCTGACCCACCGACAAACCCTAATCCAATCTAGGGAGT
GCTGTGAGCGATAGGAAGTGCCGCCGCATTCTGCACCGCGCCTCCATCGTCGACCCCTTCACTGACACCACATCTGCGCCCCGACGCCGGCGTCCTCGAC
CACCGACGTCGTCCACGCCGCCACTACTGCATCCTCAACGTCGGCGTCCTCGACCACCGACGTTGCTCCCGCCACTGCGACACCGTCACCGTCGCCATGG
CAAGCTCCTCCACCAAGCCCGAAGAGTGATGGAGCTGCACCTCCCGCTCACGGAGAGGACGACATAGGGTGTCACAGGTCTCTCCTTCACCAGGTGCAAG
TAGCTGGAAGGTTCCCCTCGACGTTGTATTTTGTGGTTGGGTGTCGAGGATCTAATATTTTTATGTGAGCAATCCGTCATGTTTTATTGTTATGCAGCAT
TGTTTTTTCTTTTTGCAAGCAATAGATGGCTGTATATTGACCAAATTTATAGCGACAGAAGTGCTATTGTTGAAGATATGTTTACTTTTTTCTATCATGA
TTATTAGTGAATGCTGCTTAACACACTTG