Detailed information on CNT30557192


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697760Panicum halliiOryza sativa13.2120.7492.8656forward
CNT30450733Panicum halliiSaccharum spontaneum13.9221.0793.2259forward
CNT30496705Panicum halliiDigitaria exilis19.8123.0197.6284forward

Expression of CNT30557192

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MEIRIAQTDNNTSTRRTSLRSKTQMGNDEHETDTEHR*

>peptide 2 (49 aa)
LQHQVALFFPFDLTENGNKSHQDNSIQSQHPTSSWDGDQDSSDRQQHEH*

Sequence

>CNT30557192
TTTGCAGCACCAAGTAGCACTTTTTTTTCCATTTGATTTAACAGAAAACGGTAACAAGTCACACCAGGATAACAGCATCCAATCCCAACACCCGACCAGT
TCATGGGATGGAGATCAGGATAGCTCAGACAGACAACAACACGAGCACTAGACGAACGAGCTTGCGATCAAAAACACAGATGGGCAACGACGAACACGAA
ACAGACACCGAACACAGGTAGGAGACGACACAGGATAACTCCGGTAACAGTAGGTAGCACAAGATAACTTGGCCACGCGGGCCCCACCGCTCAGCTCCTC
CAGTTCCCATCGGAGTTGCCGTAGCCGCCGCCGCGGTTGCCACCGTAGCCGCCGCCGCCGACGAAGCAGCGGTACTCAACATCCGACGCCGCCATCTCTT
CCTCTCACCCCCGAACGGAACCCC