Detailed information on CNT30557185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Panicum halliiOryza sativa39.1564.3481.53249forward
CNT30676534Panicum halliiSetaria viridis22.9636.4191.1146forward
CNT30523729Panicum halliiSetaria italica47.840.9292.43304forward
CNT30640852Panicum halliiNymphaea colorata19.3435.4589.43123forward
CNT30631336Panicum halliiVigna unguiculata13.8437.1384.0988forward
CNT30261311Panicum halliiBrassica rapa27.8346.4682.49177forward
CNT3017878Panicum halliiZea mays46.3842.6995.59295forward
CNT30477141Panicum halliiArabidopsis halleri27.6764.7179.55176forward
CNT30367502Panicum halliiSorghum bicolor46.0746.2994.2293forward
CNT30551796Panicum halliiOryza brachyantha27.5222.3582.29175forward

Expression of CNT30557185

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MPCSARMSTILRPSTADWYSVSSKRMAPEMYWPSPGAVTSSVRYACRFASVFSSPMDASRFPHVAFDSSIARMPRPGDATVF

Sequence

>CNT30557185
GTAGGAATTAGGTTCCATATATAAAACTGTATTATCGATTCATTGTACAGAGCGGGGCAACACGAAAACGAGCACACGGTAATTGATTAAGATCAACTTC
TTAATACAATCTCTCCCCGGTAGCCATGCATATATATATATATATATACACATAGCTAAGTAGTGGCGCAGCATCTCGATCATGGCGTGATGGCGAGAAT
ACGTGCTTATCTTGCTTAATCAGTAGTGTTGTATATATATCTCGTCGTCGTCGGAGTATAGCCGACGATCGCTTATTTAAATATTTAGTAGCTGTAGTTC
TTGACGAACATCCCCTCCTTGGCCTCGGCGGTCTCGCCGTCGGAGCCGGCGAGCGGGACGAGGCCCTTGTCGACCTTGATCCCAGGCACGATGCCCTGCT
CCGCCAGGATGTCGACGATCTTGCGGCCGTCGACGGCGGACTGGTACAGCGTCTCCTCGAAGAGGATGGCCCCCGAGATGTACTGGCCGAGCCCCGGCGC
GGTGACCAGCAGCGTCCGGTACGCCTGCCGGTTCGCCTCCGTGTTCTCCAGCCCGATGGACGCCAGCCGCTTCCCGCACGTCGCGTTCGACTCGTCCATC
GCCAGGATGCCCCGCCCCGGTGACGCGACCGTTTTC