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Detailed information on CNT3055709


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Amborella trichopodaEucalyptus grandis41.7476.979.49273forward
CNT30316147Amborella trichopodaCorylus avellana44.839.3379.86293forward
CNT30703138Amborella trichopodaQuercus lobata33.7942.1883.71221forward
CNT30375121Amborella trichopodaArabidopsis thaliana20.0317.9282.44131forward
CNT30499549Amborella trichopodaCoffea canephora40.2153.6780.61263forward
CNT30615836Amborella trichopodaSesamum indicum42.5172.5881.29278forward
CNT30277485Amborella trichopodaChenopodium quinoa32.8725.2183.26215forward
CNT3020608Amborella trichopodaCitrullus lanatus27.8341.2784.07182forward
CNT30727603Amborella trichopodaCorchorus capsularis26.9135.6382.39176forward
CNT3068683Amborella trichopodaQuercus suber48.9365.0481.88320forward
CNT30486152Amborella trichopodaOlea europaea60.8643.9879.4398forward
CNT30503775Amborella trichopodaNicotiana attenuata49.8573.5983.13326forward
CNT30637312Amborella trichopodaCapsicum annuum35.7854.4282.48234forward
CNT3098150Amborella trichopodaSolanum tuberosum57.6576.9481.7377forward
CNT30177095Amborella trichopodaSecale cereale25.0811.8383.54164forward
CNT30289293Amborella trichopodaTriticum aestivum29.5163.4979.27193forward
CNT30223417Amborella trichopodaHordeum vulgare19.1155.0783.2125forward
CNT3084565Amborella trichopodaVigna radiata31.9612.3780.86209forward
CNT30539234Amborella trichopodaBrassica napus49.8535.6381.29326forward
CNT30511842Amborella trichopodaSolanum lycopersicum57.6582.3180.9377forward
CNT30145616Amborella trichopodaMedicago truncatula33.3348.0282.11218forward
CNT30261302Amborella trichopodaBrassica rapa48.6261.5181.13318forward
CNT30457070Amborella trichopodaSaccharum spontaneum24.7723.7983.95162forward
CNT30131528Amborella trichopodaLolium perenne32.4245.9981.6212forward
CNT30231964Amborella trichopodaAnanas comosus25.9913.9381.76170forward
CNT30653881Amborella trichopodaRosa chinensis30.1218.4582.23197forward
CNT30718631Amborella trichopodaMalus domestica golden47.8654.5380.51313forward
CNT30339698Amborella trichopodaEragrostis tef25.9913.7781.76170forward
CNT30477892Amborella trichopodaArabidopsis halleri37.4622.982.86245forward
CNT30359656Amborella trichopodaLactuca sativa49.8519.2979.45326forward
CNT30411763Amborella trichopodaPapaver somniferum33.9419.782.43222forward
CNT30570592Amborella trichopodaVitis vinifera31.9664.7182.3209forward
CNT30645151Amborella trichopodaCannabis sativa44.830.7581.23293forward
CNT30319856Amborella trichopodaAsparagus officinalis31.9674.6484.69209forward
CNT30574680Amborella trichopodaOryza barthii22.6316.1681.76148forward
CNT30580197Amborella trichopodaEchinochloa crusgalli24.0119.0584.08157forward
CNT30115589Amborella trichopodaOryza nivara22.6310.3781.76148forward
CNT30603529Amborella trichopodaOryza punctata23.0919.7482.78151forward
CNT30174824Amborella trichopodaVigna angularis26.4518.2181.5173forward
CNT30550386Amborella trichopodaOryza brachyantha17.1340.7383.04112forward
CNT30332943Amborella trichopodaCynara cardunculus50.3163.1580.55329forward
CNT30726386Amborella trichopodaLupinus angustifolius31.9623.2583.73209forward
CNT3050773Amborella trichopodaCucumis sativus27.8332.3884.62182forward

Expression of CNT3055709

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSSNRGLPKWCIKFSFLPVKKLSTTITESPLAISRSTKWLPTKPPPPVTTTLKPFLFKPRGTFPEPNLNSPLK

Sequence

>CNT3055709
TGAAAATGGTTATCATGGTTGTCTCTAGTTCTGGTAATGGTTAAAGCCAATCAACCAACTGCACCCCATTTTTCCTGTCTGTATATTATAAGGGGTGTAA
CTGTAAACTAGGAGAAATATTTGCTTACCAAGTAGCAACAATGGTATAAACAAGAGAGAGAGAGAGAGAGAGAGAGAGTACCTATAGGATTAACATTGCC
CCAATATGTCTCGACTTGGGGGTGTTGCAGGGGATCACCATAGACTTCACTGGTGCTGGTGAGTAGGAAGCGAGCTCCAACCCTCTTGGCAAGGCCCAAC
ATGTTCAATGTCCCAACCACATTTGATATGATAGTCTTGACTGGATTGAACTTGTAATGAACCGGAGAAGCAGGGCATGCAAGATGATAGATCTGATCAA
CCTCTAACAAGATCGGCTCCACCACATCGTGCCTTATGAGCTCGAATCGAGGGTTGCCAAAATGGTGCATCAAATTCTCTTTCCTCCCAGTGAAAAAGTT
ATCAACAACAATAACAGAGTCACCTCTTGCCATTAGTCGATCGACCAAATGGCTTCCTACAAAGCCGCCACCACCTGTAACCACGACTCTCAAACCCTTT
CTCTTCAAACCCAGAGGCACTTTCCCTGAACCCAACCTAAACTCACCATTAAAA