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Detailed information on CNT30557055


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 4e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697228Panicum halliiOryza sativa27.5864.9885.44206forward
CNT30676504Panicum halliiSetaria viridis22.0941.4690.91165forward
CNT30523788Panicum halliiSetaria italica41.129.2192.18307forward
CNT30297329Panicum halliiTriticum aestivum27.4487.9886.34205forward
CNT30223861Panicum halliiHordeum vulgare15.2620.0784.21114forward
CNT30390800Panicum halliiTriticum turgidum27.4493.6184.88205forward
CNT30258087Panicum halliiAvena sativa20.3532.4883.55152forward
CNT30663719Panicum halliiTriticum dicoccoides22.6264.7585.8169forward
CNT30610790Panicum halliiGossypium raimondii16.0639.2280.83120forward
CNT30367192Panicum halliiSorghum bicolor31.3343.4990.6234forward
CNT30597047Panicum halliiOryza meridionalis22.6217.3986.39169forward
CNT30117945Panicum halliiOryza nivara23.4319.9886.29175forward

Expression of CNT30557055

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MYGYWLIHAAAAMVADDPRMLQYLRDGGVAGEAPRGLLDGELGGPVGDA

>peptide 2 (54 aa)
MMPGTDGGIRRWRSFRVYSATCSGVALSLDSAPGVTMDGFSRMPSNITLFSAMA*

>peptide 3 (29 aa)
MPCSPSRRISGSTIGTSPLSCIHPCMVIG*

Sequence

>CNT30557055
GTAGGAATTAGGTTCCATATATAAAACTGTATTATCGATTCATTGTACAGAGCGGGGCAACACGAAAACGAGCACACGGTAATTGATTAAGATCAACTTC
TTAATACAATCTCTCCCCGGTAGCCATGCATATATATATATATATATACACATAGCTAAGTAGTGGCGCAGCATCTCGATCATGGCGTGATGGCGAGAAT
ACGTGCTTATCTTGCTTAATCAGTAGTGTTGTATATATATCTCGTCGTCGTCGGAGTATAGCCGACGATCGCTTATTTAAATATTTAGTAGCTGTAGTTC
TTGACGAACATCCCCTCCTTGGCCTCGGCGGTCTCGCCGTCGGAGGTGAACATGATGCCGGGCACCGACGGCGGGATCCGGCGGTGGAGGAGCTTCAGGG
TGTACTCGGCCACCTGCTCGGGGGTGGCCTTGTCCTTGGACTCGGCGCCGGGGGTCACCATGGACGGCTTCAGCAGGATGCCCTCGAACATCACGTTGTT
CTCCGCCATGGCGTAGAAGGTCCGCTCGATGCCGTGCTCGCCGTCCAGAAGGATCTCAGGCTCCACGATCGGCACAAGCCCGTTGTCCTGCATCCATCCA
TGTATGGTTATTGGTTGATCCATGCAGCAGCAGCCATGGTGGCTGATGATCCAAGAATGCTGCAATACCTGCGAGATGGCGGCGTAGCGGGCGAGGCCCC
ACGCGGCCTCCTTGACGGCGAGCTCGGAGGGCCCGTTGGGGATGCTC