« Back to Panicum hallii search


Detailed information on CNT30557050


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673395Panicum halliiSetaria viridis44.7444.598.24170forward
CNT30520774Panicum halliiSetaria italica44.7415.1198.24170forward
CNT30516978Panicum halliiJuglans regia31.3217.4584.87119forward
CNT30698134Panicum halliiQuercus lobata37.377.6282.39142forward
CNT3021623Panicum halliiCitrullus lanatus29.478.2586.61112forward
CNT30730016Panicum halliiCorchorus capsularis29.4716.9281.25112forward
CNT30712288Panicum halliiGlycine max37.3724.6185.21142forward
CNT3042792Panicum halliiPrunus dulcis37.8939.0282.64144forward
CNT30294278Panicum halliiTriticum aestivum43.6838.5292.77166forward
CNT30222663Panicum halliiHordeum vulgare39.7429.8490.07151forward
CNT30560479Panicum halliiActinidia chinensis27.379.8884.62104forward
CNT3084834Panicum halliiVigna radiata28.1627.7986.92107forward
CNT30454500Panicum halliiSaccharum spontaneum44.2146.4194.64168forward
CNT30135064Panicum halliiLolium perenne41.8427.8591.82159forward
CNT30344813Panicum halliiEragrostis tef44.4732.3192.9169forward
CNT30620323Panicum halliiCajanus cajan35.537.5583.7135forward
CNT30483616Panicum halliiChara braunii27.6326.2584.76105forward
CNT30570425Panicum halliiVitis vinifera21.054.686.2580forward
CNT3027985Panicum halliiTheobroma cacao36.8425.7882.86140forward
CNT3037519Panicum halliiCucumis melo31.8411.784.3121forward
CNT30104607Panicum halliiOryza rufipogon28.4230.0895.37108forward
CNT30578384Panicum halliiOryza barthii36.5835.4697.12139forward
CNT30604850Panicum halliiOryza punctata21.588.4496.3482forward
CNT30112090Panicum halliiFicus carica31.325.8188.24119forward
CNT3049140Panicum halliiCucumis sativus21.0525.0883.7580forward
CNT3040359Panicum halliiMarchantia polymorpha33.4216.9681.89127forward

Expression of CNT30557050

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MHGPRLLEVVWEVEHVEEEVGPEHAGDAAEEEAPGELGPPVGGLQLVGLLLAAGERERGRREGMDG

>peptide 2 (41 aa)
MSDPEKVIHLYTCSLLNQEPQTHHLPTCREEGICMDPVYLK*

>peptide 3 (39 aa)
MPPKKKPPVNLAHPSAVCSLSASFLRPVSVSVGAERGWMD

>peptide 4 (36 aa)
MLQPHPSIHVRSRESNTFIHVLTAQSRTTDTSPTHM*

Sequence

>CNT30557050
GCCAGTTGTTTTGTTCCCATGTAAATTAACTCCATCCAAGTAAGAAATTAACTGTTCCATGTTACAACCCCATCCATCCATCCATGTCCGATCCAGAGAA
AGTAATACATTTATACACGTGCTCACTGCTCAATCAAGAACCACAGACACATCACCTACCCACATGTAGAGAGGAGGGAATATGCATGGACCCCGTCTAC
TTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGAGCACGCCGGAGATGCCGCCGAAGAAGAAGCCCCCGGTGAACTTGGCCCACC
CGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGTGGGCGCCGAGAGGGGATGGATGGAT