Detailed information on CNT30556999


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004907, E-value = 8e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690627Panicum halliiOryza sativa19.0635.7187.62105reverse complement
CNT3068416Panicum halliiLeersia perrieri24.148.1483.46133reverse complement
CNT30103030Panicum halliiOryza rufipogon21.053.1385.34116reverse complement
CNT30117119Panicum halliiOryza nivara19.0645.2687.62105forward
CNT30551838Panicum halliiOryza brachyantha22.874.0482.54126reverse complement

Expression of CNT30556999

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAPFIAIKIFKCPSLPPLEFSSSLIAISVMLCQMTTN*

Sequence

>CNT30556999
GGGACCCCAGGTCCCTGGACCCGTTAGTCAGGGTACGTTTCTATTTAGATCCGGATGACTAAACTTTAGTCCTGTCACATCGGATGTTTGGACATTAATT
AAGAGTATTAAATATAGACTAATTACAAAATCAATTGCATAAATGAAGACTAATTCACGAGACGAATCTATTAAGCCTAATTAATCTATCATTAGCATAT
ATTTAGAGTAAATTCCTTCAATACCATTAAAATTTGTATGGCTCCCTTCATTGCCATTAAAATTTTCAAGTGCCCTTCGTTGCCACCGTTAGAATTTTCC
TCTTCCTTGATTGCCATTTCCGTTATGTTATGTCAAATGACTACTAACTGACAAACTGGGCCCACAATTAAAGAGTAGATTCCATCTGTTTACAATACCT
GTAATGCCCATCTTCCAGTGACAACGTGGACCCACAACCAGATCTTATCTTCTTTCTACCCAAGCAAGCACTGGTTCTATACTTCTATTCCCCAACACCC
CCAAACGGCCAAACGTTATCTCCCCAAATCAGTTTGTTGGATTGAATGGGC