Detailed information on CNT30556995


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 8e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672548Panicum halliiSetaria viridis42.1146.8497.64296forward
CNT30521214Panicum halliiSetaria italica43.3941.597.38305forward
CNT30292897Panicum halliiTriticum aestivum52.262.3185.83367forward
CNT30222490Panicum halliiHordeum vulgare19.4929.1593.43137forward
CNT30390478Panicum halliiTriticum turgidum52.230.7990.74367forward
CNT30438727Panicum halliiAegilops tauschii36.4281.0190.62256forward
CNT30247486Panicum halliiAvena sativa41.6849.1695.9293forward
CNT30662078Panicum halliiTriticum dicoccoides33.1480.3488.84233forward
CNT3014188Panicum halliiZea mays29.7327.3694.26209forward
CNT30683149Panicum halliiTriticum urartu32.1551.0293.81226forward
CNT30344811Panicum halliiEragrostis tef29.4537.0395.65207forward
CNT30319122Panicum halliiAsparagus officinalis28.8813.7384.73203forward
CNT30582252Panicum halliiEchinochloa crusgalli37.1339.6196.55261forward
CNT30551896Panicum halliiOryza brachyantha31.2933.1892.27220forward

Expression of CNT30556995

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MGGRARRGGSSLSASFLRPVSVSVGAVDGSPSLNEATPYMVRQTLRMVTSPAAPRAPAWPCTGVLRSGPVRAKGPTRR*

>peptide 2 (37 aa)
SMLQPHPSIHVRSRESNTFIHVLTAQSRTTDTSPTHM*

>peptide 3 (29 aa)
MHGPRLLEVVWEVEHVEEEVACRPPSCGR*

>peptide 4 (51 aa)
VPCYNPIHPSMSDPEKVIHLYTCSLLNQEPQTHHLPTCREEGICMDPVYLK*

>peptide 5 (46 aa)
MPRSSGLTAVRYAGRLERYQATSGLEVTGVSRLPMKGSPLMGCTTW*

Sequence

>CNT30556995
GTTCCATGTTACAACCCCATCCATCCATCCATGTCCGATCCAGAGAAAGTAATACATTTATACACGTGCTCACTGCTCAATCAAGAACCACAGACACATC
ACCTACCCACATGTAGAGAGGAGGGAATATGCATGGACCCCGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGCTTGTCGGCCT
CCTTCTTGCGGCCGGTGAGCGTGAGCGTGGGCGCCGTGGACGGGTCCCCCTCGTTGAACGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGT
GACGAGCCCGGCGGCGCCCAGGGCGCCGGCCTGGCCGTGCACGGGCGTGTTGCGGAGCGGGCCGGTGAGGGCGAAGGGGCCGACGAGGAGGTAGCCGTGC
GCGAGGCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTATGCCGGGAGGTTGGAGAGGTACCAGGCGACGAGCGGGCTGGAGGTGACGG
GCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGTGACATCGAAGGATTCAATGAACCTCAGGTCTGACAACCGGGATTTT
CCAGCAGCATAGCGGTGGTACTCTTCGAAGATGGATGATAGGCACCAATTCTGCAGCTTTCTGAAGCAGCCCACCAGACATCCAGTGCGGTGCTGAGAAC
AAC