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Detailed information on CNT30556975


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 4e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673071Panicum halliiSetaria viridis44.1857.7789.52353forward
CNT30520899Panicum halliiSetaria italica48.0644.589.32384forward
CNT30180865Panicum halliiSecale cereale30.4134.3786.42243forward
CNT30287468Panicum halliiTriticum aestivum42.0577.7883.93336forward
CNT30221752Panicum halliiHordeum vulgare44.9353.6684.12359forward
CNT30387693Panicum halliiTriticum turgidum30.6623.0986.53245forward
CNT30555612Panicum halliiOryza glaberrima46.0635.2284.24368forward
CNT30436411Panicum halliiAegilops tauschii44.9354.4883.84359forward
CNT30252135Panicum halliiAvena sativa44.8141.1582.68358forward
CNT30658347Panicum halliiTriticum dicoccoides42.0562.2284.23336forward
CNT30136970Panicum halliiLolium perenne44.4355.5683.1355forward
CNT304238Panicum halliiZea mays43.854.0183.14350forward
CNT30681645Panicum halliiTriticum urartu44.9324.5483.57359forward
CNT30721860Panicum halliiTriticum spelta42.859.5882.16342forward
CNT30351770Panicum halliiEragrostis tef44.6836.5885.99357forward
CNT30597241Panicum halliiOryza meridionalis37.6734.5683.06301forward
CNT30150944Panicum halliiBrachypodium distachyon42.9351.3583.38343forward
CNT30104669Panicum halliiOryza rufipogon45.6844.0383.56365forward
CNT30551876Panicum halliiOryza brachyantha41.338.3785.76330forward

Expression of CNT30556975

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLAQYIVITQTFKLGKKMEMVKVFRDGLAGAAVYSLLGGL*

>peptide 2 (31 aa)
TIHMFRKPMVALNCSCMGMHARPIYSNYTNV*

Sequence

>CNT30556975
GTACCATTCACATGTTTCGCAAGCCAATGGTAGCATTAAATTGCTCATGCATGGGCATGCATGCTCGCCCAATATATAGTAATTACACAAACGTTTAAAT
TGGGGAAAAAAATGGAAATGGTCAAGGTGTTTCGAGACGGGCTGGCTGGGGCCGCGGTCTACTCGCTGCTCGGTGGCTTGTAGGCGAGGAACATGACGCA
CTGCACCTGCCTGACGTTGTCGAATCCGAGGATGCGGATGTAGTTGTCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCGGCATACACCTGGGTGGCGTCG
GTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTACCCGGGAGAAGTGGCGTTCTCACGGAAGACGAAGCCGACCTTGCTGA
ACTCGAGGCAGGGGACCCAGTTGTTCCTGATCAGGTAGTCGATCTGCTTCAAGAGCTCCTCCGTGGAGAGAGGCGGCAGGTACGACAGGGTCTCGAACTT
CTTGTTGTTCTCAGTCGGCCACACCTGAACAACGACACACCAATACCATCAGTTTCCTAAACTTCTTATTGCGTTGCATGCGTTCAGCTCAGTTTTGAAC
ACCATCAAGAAGCCAATTCCCCAGCTAGTAGTAGATTGTTACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGTACTTGCCGAATCCGGCCCTGGAA
AGGAGCCACGGAGGTGGCCGATGAGGCCATCACGCCGGGGGCCATGGCTTACTAGTCTTAACGAAGGAGAAGAGGCCGGAGGCAGCTGGCTAACTCGAG