Detailed information on CNT30556918


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673415Panicum halliiSetaria viridis51.4679.585.53159forward
CNT30520803Panicum halliiSetaria italica99.6869.5384.09308forward

Expression of CNT30556918

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MHRRSPDVQTTPAETRQMMDGAVGKILFRRCYYILRRGASPFLLVLHGGGAWPPQLQLQQEQPQLVPHLQVLQSQP

>peptide 2 (29 aa)
MHEEDTRDRRTACIVDHQTFRQPQLRHGR*

>peptide 3 (56 aa)
MAQLARSYLDAATIYYAGGLLLSSSCSMAAAHGRLSCSCSRSSRSWCRTCRCCSRSR

>peptide 4 (39 aa)
TRHTGSAEIHILKVACTRRTHEIDERHASSITRRSDNPS*

Sequence

>CNT30556918
GACCAGGCACACAGGTAGTGCTGAAATACATATATTAAAGGTGGCATGCACGAGGAGGACACACGAGATCGACGAACGGCATGCATCGTCGATCACCAGA
CGTTCAGACAACCCCAGCTGAGACACGGCAGATGATGGATGGCGCAGTTGGCAAGATCTTATTTAGACGCTGCTACTATATACTACGCCGGGGGGCTTCT
CCTTTCCTCCTCGTGCTCCATGGCGGCGGCGCATGGCCGCCTCAGTTGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCAGGTGTTGCAGT
CGCAGCCGC