« Back to Panicum hallii search


Detailed information on CNT30556884


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639966Panicum halliiNymphaea colorata20.810.0684.11151forward
CNT30533956Panicum halliiEucalyptus grandis23.5524.583.04171forward
CNT30629841Panicum halliiVigna unguiculata26.7233.1684.02194forward
CNT30182270Panicum halliiSecale cereale22.7329.8993.33165forward
CNT30222283Panicum halliiHordeum vulgare18.8732.6292.7137forward
CNT30564216Panicum halliiActinidia chinensis19.2862.7885.71140forward
CNT3084712Panicum halliiVigna radiata18.0446.2982.44131forward
CNT30437582Panicum halliiAegilops tauschii15.9835.1593.1116forward
CNT304588Panicum halliiZea mays23.8313.4194.8173forward
CNT30129085Panicum halliiCorymbia citriodora23.5516.2483.63171forward
CNT30720963Panicum halliiTriticum spelta19.1524.9694.96139forward

Expression of CNT30556884

Peptides detected in this lncRNA

>peptide 1 (55 aa)
KKLTVPCYNPIHPSMSDPEKVIHLYTCSLLNQEPQTHHLPTCREEGICMDPVYLK*

>peptide 2 (69 aa)
MPRSSGLTAVRYAGRLERYQATSGLEVTGVSRLPMKGSPLMGCTTWYVGCATQKQYLSDRGTQNSASFY*

>peptide 3 (41 aa)
EINCSMLQPHPSIHVRSRESNTFIHVLTAQSRTTDTSPTHM*

>peptide 4 (85 aa)
MPPKKKPPVNLGEGADEEVAVREADLDAAEQRAHGGAVCREVGEVPGDERAGGDGRLQAADEGVAVDGLHHLVRWLRNTKTVSIR*

>peptide 5 (79 aa)
MHGPRLLEVVWEVEHVEEEVGPEHAGDAAEEEAPGELGRRGRRGGSRARGRPRCRGAAGSRRCGMPGGWRGTRRRAGWR*

Sequence

>CNT30556884
AAGAAATTAACTGTTCCATGTTACAACCCCATCCATCCATCCATGTCCGATCCAGAGAAAGTAATACATTTATACACGTGCTCACTGCTCAATCAAGAAC
CACAGACACATCACCTACCCACATGTAGAGAGGAGGGAATATGCATGGACCCCGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTA
GGCCCAGAGCACGCCGGAGATGCCGCCGAAGAAGAAGCCCCCGGTGAACTTGGGCGAAGGGGCCGACGAGGAGGTAGCCGTGCGCGAGGCCGACCTCGAT
GCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTATGCCGGGAGGTTGGAGAGGTACCAGGCGACGAGCGGGCTGGAGGTGACGGGCGTCTCCAGGCTGCCG
ATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGTACGTTGGCTGCGCAACACAAAAACAGTATCTATCAGATAGAGGCACACAAAACAGTGCGAGTT
TCTATTGATATACAAGAAAAATACAAGACTACGATCTTGCAGACCATAGAGGCAGAGACTTTTGATTGATCGTACAAAGATAACTGAAACATAATTTTAT
CCCGATAATAATTGAATTCTAAGATCAAAATGAATCATAGAAGATGACTGAAGTGAAATCAAGAACTTGGAATCGAACGAAACTCTCAAAGAAAGATGCA
TCTTTTCAGTGCTCAGTTGATCTACT