Detailed information on CNT30556876


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 1e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520861Panicum halliiSetaria italica95.4436.8185.29272forward
CNT308353Panicum halliiZea mays50.5313.7186.11144forward
CNT30150971Panicum halliiBrachypodium distachyon96.8429.1882.25276forward
CNT30582550Panicum halliiEchinochloa crusgalli50.5323.1191.67144forward

Expression of CNT30556876

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LGPAGLLAAWGLVGEEHDALHLPDVVESEDADVVVG*

Sequence

>CNT30556876
CTTAGGCCCCGCCGGTCTACTCGCTGCTTGGGGGCTTGTAGGCGAGGAACATGACGCACTGCACCTGCCTGACGTTGTCGAATCCGAGGATGCGGATGTA
GTGGTCGGGTAGCGGCCATCGTAGTACCCGGGAGAAGTGGCGTTCTCACGGAAGACGAAGCCGACCTTGCTGAACTCGAGGCAGGGGACCCAGTTGTTCC
GGATCAGGTAGTCGATCTGCTTCAAGAGGTCCTCCGTGGAGAGAGGCGGCAGGTACGACAGGGTCTCGAACTTCTTGTTGTTCTC