Detailed information on CNT30556802


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 4e-98

BLAST vs NONCODE:
NONZMAT000139, E-value = 7e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Panicum halliiSetaria viridis40.0568.694.92354forward
CNT30520246Panicum halliiSetaria italica57.6954.2693.33510forward
CNT30289434Panicum halliiTriticum aestivum27.1541.4593.33240forward
CNT30392320Panicum halliiTriticum turgidum21.729688.54192forward
CNT30251924Panicum halliiAvena sativa33.654.692.59297forward
CNT30450022Panicum halliiSaccharum spontaneum34.2829.394.06303forward
CNT30361377Panicum halliiSorghum bicolor32.5825.5889.93288forward
CNT30148227Panicum halliiBrachypodium distachyon1966.6791.07168forward
CNT30496422Panicum halliiDigitaria exilis26.0237.2895.22230forward

Expression of CNT30556802

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAGSSIAGCLPRTTSRARSRFRRGRRRATCRRGGRRS*

>peptide 2 (53 aa)
MASPVTLLTSAKAGMPSWSLTLVLKRMSLYQCWWTSLGLAGASTTAPSRTARQ*

>peptide 3 (30 aa)
FTAKIHQILDNLLYVVGLQLITIHIAATCT*

Sequence

>CNT30556802
TTTCACGGCCAAAATACACCAAATATTAGATAATTTATTGTACGTAGTAGGATTGCAACTGATTACTATACATATAGCTGCAACGTGTACATGACAGTAA
GTAGTAAGCTCCTGCCTCCTGCTTTCTCTATCTAAGCATGCTTAGCTAGACAAAAGCAAGGCAGCAGCAGGACAAGAAGGCTCAATTATTCATTTTAAGA
TCCAGCAGTACGTAGCTACTGTAGTACGGGACGATGATGCTGAGTTGCTGATGATGATCTGAGTCTTCTCGATCAGTAGTATGGCTGGATCTTCCATCGC
TGGTTGTCTCCCTCGCACCACTTCCAGAGCACGATCTCGGTTCCGTCGCGGACGCCGCCGTGCCACTTGTCGCCGTGGAGGGCGTCGAAGTTGAGGTAGA
TGTTGTTCACCATGCGCACGCAGCGGAAGCCGTTGCCGACGTCGCGGCTCTCCGTCCACAGCACGGACTCGTCCTGGTAGTCCGGGTTGTAGGGCACCAG
CTTCACCGGGTGGCCCTGGCCGGCGGAGTGCTTGATGGCCTCGCCGGTGACCTTGTTGACGAGCGCGAAGGCCGGCATGCCCTCCTGGTCCTTGACCCTG
GTGCTGAAGCGCATGTCCTTGTACCAGTGCTGGTGGACGTCCTTGGGGTTGGCCGGGGCGAGCACGACGGCGCCGTCGCGGACGGCGAGGCAGTAGTTCT
CATTGGCGCGGCAGAAGATCTTGAACACCTGGTTGGGGCCCGACGCCGGGGGAGCCGGCTGGTTGTGGTGGTGGTGCCCGAACCACGACATGTTCGATCT
CTTCGTGCCCGCAGGGGGGGGGGGGGGGGACTGGAGAGAGAGTGCGCTGTGCGATGTGCTGCTGTGATGAGCTCGAGAGGTGAT