CANTATAdb - search

Detailed information on CNT30556764

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 2e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30287058	Panicum hallii	Triticum aestivum	26.73	60.06	88.52	209	forward
CNT30221016	Panicum hallii	Hordeum vulgare	18.29	24.96	92.31	143	forward
CNT30658727	Panicum hallii	Triticum dicoccoides	40.41	45.66	89.56	316	forward
CNT30680806	Panicum hallii	Triticum urartu	26.73	60.23	88.52	209	forward
CNT30362957	Panicum hallii	Sorghum bicolor	39	38.46	94.43	305	forward
CNT30596665	Panicum hallii	Oryza meridionalis	18.54	30.33	91.72	145	forward

Expression of CNT30556764

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MASPVALFTSANAGYPSSSLMLVLHRMSLIQCWYSSLGFAGASTTLPLRIVMA*

>peptide 2 (30 aa)
MLLTMRTQRKPLPTSRLSVQSTDSSRKSGL*

>peptide 3 (30 aa)
MAGSSIAGCLPRTTSRARSRFRRGRRRRCC*

Sequence

>CNT30556764
AATACACCAAATATTAGATAATTTATTGTACGTAGTAGGATTGCAACTGATTACTATACATATAGCTGCAACGTGTACATGACAGTAAGTAGTAAGCTCC
TGCCTCCTGCTTTCTCTATCTAAGCATGCTTAGCTAGACAAAAGCAAGGCAGCAGCAGGACAAGAAGGCTCAATTATTCATTTTAAGATCCAGCAGTACG
TAGCTACTGTAGTACGGGACGATGATGCTGAGTTGCTGATGATGATCTGAGTCTTCTCGATCAGTAGTATGGCTGGATCTTCCATCGCTGGTTGTCTCCC
TCGCACCACTTCCAGAGCACGATCTCGGTTCCGTCGCGGACGCCGCCGTAGATGTTGTTGACCATGCGGACGCAGCGGAAGCCGTTGCCGACGTCGCGGC
TCTCCGTCCAGAGCACCGACTCGTCCAGGAAGTCGGGGTTGTAGGGCACCAGGCGCACCGGGTGGGACTGCCCCAGGGAGTGCTTGATGGCCTCCCCGGT
GGCCTTGTTCACCAGCGCGAACGCCGGGTACCCCTCCTCGTCCTTGATGCTCGTGCTCCACCGCATGTCCTTGATCCAGTGCTGGTACTCGTCCTTGGGG
TTCGCCGGCGCCAGCACCACCCTGCCGTTGCGGATCGTCATGGCGTAGTTGGGGTTGGCGCGGCAGTACACCTTCACCGTCGGCTGCGGCGGAAGCGGAC
GGCCGCACCCGTGGCCCTCGATGTTCACCTGCGACATGCCGTACGGAACCGGCGGCGCGTACCCGGGCGTAGCCAGGCCGCC