« Back to Panicum hallii search


Detailed information on CNT30556731


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671584Panicum halliiSetaria viridis7.6154.4597.48159forward
CNT30338817Panicum halliiEragrostis tef14.5196.594.72303forward
CNT30593354Panicum halliiEragrostis curvula12.0298.4394.42251forward

Expression of CNT30556731

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MARTSGQNNSTKNVSSLAISIYMNDHGSWM*

>peptide 2 (34 aa)
MEHRLWTICPHLPAASFGELKTTSPAYITLRRSS*

>peptide 3 (58 aa)
MKSPFVVVSSSSSTSTISALIGFGSSKALPTRSNSRPHPTDGAPTLDDLPTSPCSIFR*

>peptide 4 (74 aa)
MLPASLPSAVPPLHAPQQPRFLHQVLPRTATRASMLLTGILGVGVEFPSQRCQTKVTTRNLLVLSMPYTVRRES*

Sequence

>CNT30556731
CCTTCGTAAAAATAAAAGATTTCACGAGAGTTCTCACGAAAATTGAGCCCCCCTTATGAAATCTCCGTTTGTGGTAGTGTCTAGCTCATCCTCCACATCC
ACCATTTCTGCGCTGATTGGATTCGGTTCAAGCAAAGCTCTCCCCACTAGATCCAACAGCCGCCCGCATCCAACAGATGGAGCACCGACTTTGGACGATC
TGCCCACATCTCCCTGCAGCATCTTTCGGTGAATTGAAAACCACGTCGCCCGCATACATCACGCTACGACGGAGCAGCTAGCATACAACATCGGAGCGAG
ACGAAGCAGAAGCTGATTTCAGGTCTGGACGATGCTGCCAGCATCATTGCCAAGCGCAGTACCACCCCTCCACGCACCACAGCAGCCGAGGTTTCTTCAC
CAGGTCCTCCCAAGAACTGCTACGCGTGCGTCTATGCTCCTAACCGGCATCCTCGGTGTGGGTGTCGAATTTCCATCCCAAAGGTGTCAAACCAAGGTCA
CAACAAGGAACCTGCTGGTGCTTTCCATGCCTTACACCGTGAGGCGCGAATCGTGATCATCTTAGTGCGTCCACTACGCAGTGTTCACCCAGGCCTTTTA
TGGTACATGCAGGACGATGGGCGAGCAAGATGGTGAATCCCCAGCTGCAAATCATATAGTCTGGGCAGACGTGAGTGATGGTAACAACTAACAAAGTTCG
CCAGCACTCATAGCGCTGGTCTGGATCCGATGTGGAGGGTCTTGGACCTTAGGGCAAGATCATTCTTACAGGAGTACAAAGACCAACCTTTTATGAGCCA
GGAATAAATGGGATCTCAGCCAGTGATGTAGGAAGAGTTAGATGGAGATTTGAAGTAGCTAGATATGAGATTATACCTGCTGCATAACCTGCAAGGGCAA
AACCGCTCACCTGCCAACACAAGAAGGAACATGAAAGATGAATAATTGGTTACTAGAATATGGCGCGAACCAGTGGGCAAAATAACTCAACTAAGAATGT
TTCATCTCTAGCAATAAGCATATATATGAACGATCATGGAAGTTGGATGTAACCTTTAGTCAGCAACAGGCAGCAATAGTATATTCATATAGCTACACTT
TAATATGTTTATACAAATAAGTGGACTGCAGTAATCAACTAAGGTAGTCATGTTTGCTCAACACTACGCTCCTTAAAAGGTCTAATAGCAGACAGAGACT
GGATTCAACAGTTTATCAGGGAAACATAGGAAAATGCACTTCGACGCAGAAAAAAGGGATCTGCAGTATATGGTACTTTCATTAACTCATTAGGCTGTTA
CATAGCTCCTCATCATATTTGAACAAAACAGAAGATTACCTTGCGAAAATACCAAAGGAAATCCACCTTTTCGATTCCCATAAAAGCAACTCCTGCTGCA
GAGCCAATGATAAGCATTGAACCTCCAGTACCAGCACAGAATGCAATAAGCTGCCAGAAGTCCGAATCTTGAGGATATGAAGTCAGGTCATACATTCCCA
TCGTTGCAGCAACAAGTGGAACATTGTCTATAACTGCTGATGCCACACCAATTGCACTAGCAATAAGATCACCATTTGGAATATTGGCATCAAGATAATT
CGCTAACTGCCTCAAGATCCCTGCAGATTCCAGGCTAGTGCCAAAAGAGAGAAAAACTATTAGCAAATGAAGAACATCTGATTGGTAATGGACTAGACTG
CAAATAACAGGACAGCTGCTTTTTCATTACACTAACACCATAAACTCATATAGTTCATAAGTGTAAAGGTACATTACATTTAGTTAATTACCATATCACA
AACAGAACTTTGGCCTAAATGACATTTACAGTGGCAAATCATTGCACAAATAAATAATTAGTCTTATCTTTAAGATATGCTCCAACTAATCTTATCATCT
CTATGCCAGCTCATAGTTACTAGCATTTCACTGTAACCATGGCACGACGGCATACAGCTCTGTACTTTATTTTTATTTTGAGAATATACTTTGAATATTA
ACAATTATGCATGCCAAATGCATACGATTCTCAGTGGTGTATGCATTTCTTAAATAATTTTAGTAAGAGAAGGGGTGAAGGATTTACC