Detailed information on CNT30556700


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9T0H7|H2A8_ARATH, E-value = 3e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671931Panicum halliiSetaria viridis13.1832.6997.6585forward
CNT30520588Panicum halliiSetaria italica23.5733.7894.08152forward
CNT30286315Panicum halliiTriticum aestivum26.6720.2681.4172forward
CNT30436659Panicum halliiAegilops tauschii22.9525.1793.92148forward
CNT30247674Panicum halliiAvena sativa12.7121.5285.3782forward
CNT30666728Panicum halliiTriticum dicoccoides26.227.0483.43169forward
CNT30446766Panicum halliiSaccharum spontaneum13.1822.0888.2485forward
CNT30134010Panicum halliiLolium perenne13.952486.6790forward

Expression of CNT30556700

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLGMTPPLAMVTVPSRRESSSSLRTASWMWRGTIRVFLLSLAAFPASSRT*

Sequence

>CNT30556700
TTTGATTAACCTGTCATCGGAATGAAGCACCTTTTATAGAGACATTGCAACAAATACAGAAGTACCTAATCCTTAGTGAACACAAGAGTAAACTAGTTTT
AGCATCGGTACAGGCACACACATACAACCTCCCTACAAGAAGCACCACCACCGCAAGGACGGTGCCGTCAGGGATCTAGTCCTCATCGCCGGCAGCAGCC
TTGGCGCTGCCGCCTCCGGCCTTCTTGGGGAGCAGCAGGTTGTGGATGTTGGGCATGACACCACCGCTAGCGATGGTCACCGTGCCCAGCAGGCGCGAGA
GCTCCTCGTCGTTGCGGACGGCAAGCTGGATGTGGCGCGGCACGATACGGGTCTTCTTGTTGTCCCTTGCGGCGTTCCCGGCCAGCTCAAGAACCTAGTC
GAAACGAGGGAAGAAATCCAGGCAATTAGTCAAAATTCCCACTGATTAGACTGAAATTAGCCAATCGAACGACACACGCCGCTCGAATTTGAATCATTTC
CCTTAAGCCCCAACTGTTCCAATCTGATTGCAAAATATTTCGCCCCAATTTTGCTACCCTACCTAACTATCAAAGTAATGAGTACCCCGCACCCAATTTT
TGTACTAACTACTATTCAAAACCAAATCGAAGACTCCAACCGCAA