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Detailed information on CNT30556699


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30436341Panicum halliiAegilops tauschii30.4959.8791.21182forward
CNT30340854Panicum halliiEragrostis tef23.7962.2897.18142forward
CNT30596537Panicum halliiOryza meridionalis34.5137.1291.75206forward
CNT30604388Panicum halliiOryza punctata26.848.1993.12160forward
CNT30551356Panicum halliiOryza brachyantha26.345.3892.99157forward

Expression of CNT30556699

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLTMRTQRKPLPTSRLSVQSTDSSRKSGL*

>peptide 2 (37 aa)
MAGSSIAGCLPRTTSRARSRFRRGRRRATCRRGGRRS*

Sequence

>CNT30556699
GGGACGATGATGCTGAGTTGCTGATGATGATCTGAGTCTTCTCGATCAGTAGTATGGCTGGATCTTCCATCGCTGGTTGTCTCCCTCGCACCACTTCCAG
AGCACGATCTCGGTTCCGTCGCGGACGCCGCCGTGCCACTTGTCGCCGTGGAGGGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGACGCAGCGGA
AGCCGTTGCCGACGTCGCGGCTCTCCGTCCAGAGCACCGACTCGTCCAGGAAGTCGGGGTTGTAGGGCACCAGTGCTGGTACTCGTCCTTGGGGTTCGCC
GGCGCCAGCACCACCCTGCCGTTGCGGATCGTCATGGCGTAGTTGGGGTTGGCGCGGCAGTACACCTTCACCGTCGGCTGCGGCGGAAGCGGACGGCCGC
ACCCGTGGCCCTCGATGTTCACCTGCGACATGCCGTACGGAACCGGCGGCGCGTACCCGGGCGTAGCCAGGCCGCCGTATCCGTACCCCCCGTAGCGCTC
ACGCCCGTACACGTCCATGCTGCTAGCTAGTATGCTAAGTACCTGGTGGTAGCAGGTTGTGGTGGTTCTTCCTTAATTCCTCTGAGCTCTGATTCTG