CANTATAdb - search

Detailed information on CNT30556644

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-130

BLAST vs NONCODE:
NONSTUT001352, E-value = 8e-22

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30641294	Panicum hallii	Nymphaea colorata	55.08	46.59	88.14	472	forward
CNT30596853	Panicum hallii	Oryza meridionalis	57.53	50.05	91.48	493	forward
CNT30369293	Panicum hallii	Oryza glumipatula	57.76	52.38	91.31	495	forward
CNT3099595	Panicum hallii	Oryza rufipogon	53.21	52.72	92.98	456	forward

Expression of CNT30556644

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (40 aa)
LKSDKSMINHQGTKIQNHYYCTNIIFHLSVQRQLIISTCP*

>peptide 3 (46 aa)
MRQLAASMNPRTPPPEDNEVAERMELSCRGRSWWSARPRGSKLPPG*

>peptide 4 (50 aa)
MKLQSGWSLVAGDEVGGRRGRGGRSCRRGRAGRRPRRAGRRQCGSPRRRP*

Sequence

>CNT30556644
TTAAAATCTGACAAATCAATGATTAACCACCAGGGAACAAAAATACAAAATCACTACTATTGCACAAACATCATCTTTCATCTTAGTGTACAACGCCAAC
TCATCATCTCGACCTGCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCGGCAGCTTGCAGCATCAATGAATCCACGTACGCCCCCTCCGGAAGAC
AATGAAGTTGCAGAGCGGATGGAGCTTAGTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGA
CGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTGGAT
CAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCG
AGCAGCTCGGGGAAGACGCAGCCAAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCGGGGTCAGCGG
ACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGG
GCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGGGGAGGAGATCGCCATGGTGGAGGCG
GCCATTGCGTGAGGCGAGGGAGAGTTGCTGAGACCGGTCGCTAGCTGCTTGCTGTGG