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Detailed information on CNT30556342


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Panicum halliiOryza sativa5.4623.3186.0586forward
CNT30225098Panicum halliiHordeum vulgare6.134.5387.596forward
CNT30667276Panicum halliiTriticum dicoccoides7.9423.4586.4125forward
CNT30460356Panicum halliiSaccharum spontaneum11.7538.6289.19185forward
CNT30686240Panicum halliiTriticum urartu7.6226.0985.83120forward
CNT30722257Panicum halliiTriticum spelta7.6232.2685.83120forward
CNT30352729Panicum halliiEragrostis tef17.0385.6284.7268reverse complement
CNT30584129Panicum halliiEchinochloa crusgalli10.4838.5593.33165forward
CNT30593128Panicum halliiEragrostis curvula7.526.3483.05118forward
CNT30603733Panicum halliiOryza punctata7.8823.487.9124forward

Expression of CNT30556342

Peptides detected in this lncRNA

>peptide 1 (99 aa)
VLACSLNSSVRVVRLHHLSLSSRTPPLRRRREKTSGHGSPVRSGDVGDRRLPGQDRRRVLLVLLRLLLQHPRLPVLLVLIDRCGLLPGPASALLAGLGF*

>peptide 2 (63 aa)
MVNMGILHPGVWQFATVRWKAELDHTMTPRPPFPFAFSVSLGRRLQGDNETFKAAHLAAFFRF*

>peptide 3 (42 aa)
MDPPSAQVMSATDDFQDKTVDECCSCCYDCCSSILDFLCCSS*

>peptide 4 (45 aa)
MILVSSTLFINISKEAWIDFLFRNFNVRVCRSISCSELVQHLRKK*

>peptide 5 (33 aa)
ARLFFKFISPRCSSSPPLPFFSDATAPSQTREN*

>peptide 6 (39 aa)
MFVFADRLAVRSSYSISERNSSQIRLSASLSLPLSALIF*

Sequence

>CNT30556342
GTGCTCGCTTGTTCTTTAAATTCATCAGTCCGCGTTGTTCGTCTTCACCACCTCTCCCTTTCTTCTCGGACGCCACCGCTCCGTCGCAGACGCGAGAAAA
CTAGTGGCCATGGATCCCCCGTCCGCTCAGGTGATGTCGGCGACCGACGACTTCCAGGACAAGACCGTCGACGAGTGTTGCTCGTGCTGCTACGACTGCT
GCTCCAGCATCCTCGACTTCCTGTGCTGCTCGTCCTGATCGACCGGTGCGGGCTCCTCCCCGGCCCTGCCTCGGCGTTGCTCGCTGGTCTTGGGTTCTAG
ATGTCCTGGAGTTCTTGGATTCTTTAGGTCCTTCGGTGATGATACTTGTAAGCTCGACTCTGTTCATCAACATCAGTAAGGAAGCTTGGATCGATTTCCT
TTTTAGAAATTTTAATGTTCGTGTTTGCAGATCGATTAGCTGTTCGGAGCTCGTACAGCATCTCCGAAAGAAATAGCTCTCAAATCAGACTCTCTGCCTC
TCTCTCTCTACCTCTCTCTGCATTAATTTTTTAACGTCAATTCTAGCAGTGATCTCTAAATCTCACTTTAAATTAAAAAGGTGAGACTCATTTATCAGTT
GACAGAGGCAGAGACGCTCCAGAAATAGAGGGTGGAGGAAGAGATTTGAAGATCTTTCCAAAATAGCAGATTTAGTAGAGGACGTGTAGGAGTGTAATTT
TTTTATTCCAGCTTCAAATTTGACACGAGGGTTTACTGAGAGGGTCTAGTTGCTCTTAGCAAAAGTTTTTTTTATAAAAAATAAGTTCTTACATTTGGGG
TGTGTTCGTTTCCTACCCTCTAAATTTTAGACCCATCACATCAAAAAGAATCTTGTCATTTAGAAGTATTAAATAAAGTCTAATTATAAAACTTTTTGCA
CAGATGGATGCTAATTCACGAGACAAATTTAATGAGCCTAATTAATCCATAATTTGCCACAGTGATGCTACAGTAATCATCCGCTAATCATGGATTAATA
TACCTCATTAGATTCGTCTCGCGAATTAGCCCTGGGGTTCTGCAATTAGTTTTATAATTAGACTTTATTTAATACTTCTAAATGATAAGATTCTCTATGA
TGTGACTCCTCCAAACTTTAGAGCAGGAAACAAACACACCTTGGTTCTGCGTTTTCTTGTGCACTGACCACTGAACCAGAAGTCCATGACGTGATGTGAA
TGTGACGTGTGATGGTCAATATGGGCATCCTGCATCCTGGTGTTTGGCAGTTTGCTACCGTGAGGTGGAAAGCTGAATTGGACCACACCATGACACCACG
CCCTCCTTTTCCGTTCGCATTTTCTGTTTCGCTGGGACGTCGACTGCAGGGCGACAACGAGACCTTTAAGGCAGCTCATTTAGCTGCATTTTTCCGTTTC
TAGTTGTGATGATGATACCGATTTGGATTTTTGTATTATTATAACACTACTAATGACATGATACCAAAATGATCGGTTTAGTAAGAGTTCGTTTGTGCCA
ATAATATAGTAGCAATACGATTATCAGCTAACCTACATAACAATGGACTATTGATAGCTGTAACTCGCACTGGC