Detailed information on CNT30556241


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587177Panicum halliiMusa acuminata4.3823.7887.1878forward
CNT30459193Panicum halliiSaccharum spontaneum10.7721.493.23192forward
CNT30107387Panicum halliiOryza longistaminata8.6420.1691.56154forward
CNT30100086Panicum halliiOryza rufipogon8.6425.5490.91154forward
CNT30585682Panicum halliiEchinochloa crusgalli33.7851.8184.55602forward
CNT30495742Panicum halliiDigitaria exilis19.6424.0291.14350forward

Expression of CNT30556241

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MQYAKVALSELGNYVFRLTLVPLGTTQWQANFEETRVHRSPFVCQC*

>peptide 2 (46 aa)
MAPSCQASSRRPRERHRSPGGRAPRRPAQIRARPANRRAASSTSHL*

>peptide 3 (55 aa)
MLQCYLLDLINSLYLVYEAGFSSLTTCKFCYKKYLKEKACILRCLPLFVLHSYPL*

>peptide 4 (87 aa)
RCAPALLVGGGGRRGRSCDTPPPPILIPASPRYFWLPGAFPPPTRRPPRQPPRLHSHIGPGDFESTSDFACFLPRRRPPSLSLSPRW*

>peptide 5 (32 aa)
MASAGWCWKVRKFQLYAVDEFKVVCFNVICWI*

>peptide 6 (31 aa)
ALRARAACRGRGATWPKLRHSSAAYFNPGEP*

Sequence

>CNT30556241
GCGCTGCGCGCCCGCGCTGCTTGTCGGGGGAGGGGGGCGACGTGGCCGAAGCTGCGACACTCCTCCGCCGCCTATTTTAATCCCGGCGAGCCCTAGATAT
TTTTGGCTCCCCGGCGCCTTTCCGCCCCCTACAAGAAGGCCACCCCGGCAGCCTCCCCGGCTGCACTCACACATCGGGCCGGGAGATTTCGAATCCACCT
CAGATTTCGCTTGCTTTCTCCCGCGGCGTCGGCCCCCGTCTCTCTCTCTCTCTCCGCGCTGGTGAGCCCCCGCGGGCGACGTGTGTCCCGCGGGGGGTTT
TCCTTGCCTTCGACGGCCATCTGTTCGCCTCGCATGGCTCCCTCCTGCCAAGCGTCCTCGCGTCGTCCCCGGGAGCGCCACCGCTCGCCAGGCGGCCGAG
CGCCGCGGCGTCCAGCCCAGATCCGCGCGCGCCCAGCTAATCGCCGCGCCGCGTCCTCAACTTCACATCTCTAATAGCTCACCAGCATTCCGGCTCGGCG
CTGCCTGCCTTCTCCCTTCCCTCCTCCTGTATGTAGCTCGTAGCCCCACCCACCCCGAAATAGCAGTTCAGAATGGCTCCGCTTGCCTTTCGCATCTCTC
CAGCCGCAGCGGCCCCCCGTCGTCGTCTCAGATTAATGCAAGGGGCAGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTCAG
ACCATACCTATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAAGAAAAGCACAGGTTATGTTATTGA
TGAACACACAGGTCAAAATTAAATGAATTAGCATGTGTCTGTAACAAGAAGGATGTTATATTTATGAAATCTTGTAGCATGAAGTAGCACTTCGCAGCAT
TATACTTATACCACAGATATTAGGTTCAAAACTTAATTTGTCGTCCATTTTATAGCATGAAGTAGTATTTTGTTATTAAGGAAATGCAAAGATCGGTTCT
CCATATTGGCAATGTGGAGGCTATCTTAATGGGTTTTTTTAGCTTTGGTCATCATGCAGTATGCTAAGGTGGCACTTAGTGAGCTAGGAAACTATGTATT
TCGGCTGACATTGGTGCCCCTGGGCACTACGCAGTGGCAAGCAAACTTTGAAGAAACAAGGGTACACCGATCGCCTTTTGTCTGCCAGTGCTGATTCTTC
TGTAGTTAATGTTCAGAGTGCTCAATGTCTACACAGCGGTCGGAGGAGGTATGAGAGCAAATGGAAGTTCAGGTATTTGAACTGCCCTGCAGATCGTTGA
GGGCAGTTTCTGGTGTAGACTATTGGAGATTGGAGTTTATGAGATGATCCACGGCAGCGCTAGAAATTATACATTTCGGTGTCTTGATTAACCAAACTCA
AGTGGCAAATAGGCTTTTGCAGTTAGAAAGTAAAATGGCTGATTATGGCATCCGCTGGATGGTGTTGGAAGGTGAGAAAATTCCAACTATATGCAGTGGA
TGAATTCAAGGTTGTATGCTTCAATGTTATCTGTTGGATCTAATTAATTCATTATACTTAGTCTATGAAGCAGGCTTTTCTAGTTTAACAACTTGTAAAT
TTTGCTATAAGAAGTATTTGAAAGAAAAGGCATGTATTTTGAGATGTCTTCCTCTGTTTGTGCTTCATTCATATCCTCTGTAAATCTAAAAATATTCATG
TTTGATTGAAAAGACATGACCAAATAAATCTGATTGTAGAAGTGAAAGATGCAAGACAATGAGAATGCAGAGACGTTTTGTC