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Detailed information on CNT3055616


BLAST search results

BLAST vs Swiss-Prot:
sp|P49387|RT14_BRANA, E-value = 4e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378677Amborella trichopodaArabidopsis thaliana47.2412.1990.42334forward

Expression of CNT3055616

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIQEMRKNSDTERGRLVEIHQFLTRANELFLGNLDNL*

>peptide 2 (31 aa)
MFVITYNLLLRPLTENPPHLFAKSHSTVVKS*

>peptide 3 (66 aa)
FVTFSYIHMVILSLSKSTTPYVVSVWGDRCGREVPHFDSRPVSISDPRSGITPLGLFFGPEPAGSR*

>peptide 4 (65 aa)
MDLPSSAAELTFVLLVWWVATKMISLCPSKDLEMLVHENDTGNAKELRYGTRATCGNTSVSYSCK*

Sequence

>CNT3055616
CATTCGTAACTTTTAGTTATATTCACATGGTGATATTATCTCTTTCCAAGAGTACTACCCCGTATGTAGTCTCTGTCTGGGGAGACAGGTGCGGTAGAGA
GGTCCCCCACTTCGATTCTCGTCCAGTTAGTATCTCCGATCCGAGATCAGGGATTACTCCGTTAGGTCTTTTCTTTGGTCCGGAGCCGGCCGGTAGCCGG
TAATGGACCTACCCTCGTCAGCAGCAGAGCTCACCTTTGTTCTATTGGTTTGGTGGGTGGCTACCAAGATGATTTCTTTATGCCCATCAAAAGACCTCGA
GATGCTAGTCCACGAAAATGATACAGGAAATGCGAAAGAACTCAGATACGGAACGAGGGCGACTTGTGGAAATACATCAGTTTCTTACTCGTGCAAATGA
ACTATTTCTTGGCAACTTGGACAACTTATAAAGATATTTGTCCCGCATATCACTAGGAAGATCGGGATCTTTACCAAAGGCTTTATAAAGCTTTCGTCTC
AATTCATATTTAGCCGCGAACAATCTATGTTTGTGATCACGTATAATTTGCTTCTCCGACCTCTTACTGAAAATCCCCCTCATCTTTTTGCAAAAAGCCA
CTCCACGGTGGTAAAGTCTTAGCTTGTGTGTTTGCTGAAGTGACAATAGTCGCATTGAACCCTCAGATATGCTCGAAGATGTCGAAATGATCTTCCAGTT
CTGGGGA