Detailed information on CNT30556133


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHI4|RLP3_ARATH, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595843Oryza glaberrimaOryza meridionalis60.8887.6486.56305forward
CNT30110592Oryza glaberrimaOryza longistaminata42.5153.6585.45213forward
CNT30603678Oryza glaberrimaOryza punctata60.0829.0385.71301forward

Expression of CNT30556133

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MSFTMRASSIVPCNPLLAKERYSNDVALKRSPGRGPLMLLALALRSLRAEHLPIPGGMLPLNLLYPRSRTAKDGELLQKEEGPR*

>peptide 2 (35 aa)
MANCCRRRKVPVEAIEADIKDDDAARRHQLCWKAT*

Sequence

>CNT30556133
GTGCAATCTCCCAATGATGATGGCAGCTCTCCAGATAAGTTGTTGCTGCAAATGTGAAGCTCCTCTAGTCTTTTCAACTGGCCTATAGAATTTGGGATCT
TGCCACTGAATCTATTCCATCGAAGATCAACAAAAACAAGATTGATGAGCTTTACGATGAGAGCATCATCAATTGTTCCTTGCAACCCATTGTTAGCGAA
AGAGAGGTACTCCAATGATGTGGCATTGAAGAGATCACCTGGGAGAGGCCCTCTGATGTTGTTGGCATTAGCCTTGAGAAGTCTAAGGGCAGAACATTTA
CCTATTCCAGGGGGGATGTTGCCACTGAACTTGTTGTACCCAAGATCAAGAACAGCAAAAGATGGCGAATTGCTGCAGAAGGAGGAAGGTCCCCGTTGAG
GCGATTGAAGCTGACATCAAGGACGACGATGCTGCCAGAAGACATCAGCTCTGCTGGAAGGCCACCTGATAGGGAGTTGTACGACAGGTTGAGGCGCGAC
A