Detailed information on CNT30556102


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENB7|YCF68_ORYNI, E-value = 1e-64

BLAST vs NONCODE:
NONORUT005034, E-value = 8e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Oryza glaberrimaSetaria viridis78.9225.7996.69483forward
CNT30272810Oryza glaberrimaChenopodium quinoa18.1429.8492.79111forward
CNT30708350Oryza glaberrimaGlycine max64.8749.6988.92397forward
CNT30610339Oryza glaberrimaGossypium raimondii53.197.687.38325reverse complement
CNT30627901Oryza glaberrimaDaucus carota92.3248.2992.21565forward
CNT30479986Oryza glaberrimaArabidopsis halleri15.3637.694.6894reverse complement
CNT30362263Oryza glaberrimaSorghum bicolor30.2321.3998.92185forward
CNT30595932Oryza glaberrimaOryza meridionalis45.4220.9299.64278forward
CNT30646246Oryza glaberrimaCannabis sativa37.7578.3189.18231reverse complement
CNT3057391Oryza glaberrimaAmborella trichopoda29.93.6286.89183forward
CNT30318962Oryza glaberrimaAsparagus officinalis95.9228.1594.38587forward
CNT30148621Oryza glaberrimaBrachypodium distachyon44.2869.8595.94271forward
CNT30575379Oryza glaberrimaOryza barthii51.1472.6296.81313reverse complement
CNT30116753Oryza glaberrimaOryza nivara64.0597.76100392forward
CNT30726606Oryza glaberrimaLupinus angustifolius92.9748.2689.63569forward

Expression of CNT30556102

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SSSVLLPLLPLTMASPWEITPMGRKRKALRDPPGPTLDTLRSFFKPALLPFRVKR*

>peptide 2 (57 aa)
FKCASSPSPPYHGKSLGNNSDGQKKEGVKRPSWPNPRHSKILFQTCSAPISSQEIDK*

Sequence

>CNT30556102
TCTTCAAGTGTGCTTCTTCCCCTTCTCCCCCTTACCATGGCAAGTCCTTGGGAAATAACTCCGATGGGCAGAAAAAGGAAGGCGTTAAGAGACCCTCCTG
GCCCAACCCTAGACACTCTAAGATCCTTTTTCAAACCTGCTCTGCTCCCATTTCGAGTCAAGAGATAGATAAATAGCCACATCCCATTGCACTGATCGAG
GGCGCTCGTAGTGACTTAGGGAGTCGAAGACCAAGAAGTGGCTTATTTATACCAAGCATTCCTCTTATGGCTAGATCCAACCTCCTGGTCCCTGCGGAAA
GGAAAAAGAATTTCACGTTCTTCCTTTCAGGAAGGGAGGATTAGGGAAGTCCTATTGATTGCTGCTTTCTCCAGACCGCCGGGAAAAGCATGAAAAAAAG
GCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGTGATCTCGTAGTTCTTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCATTG
AGGACGAACCTCAACCTGTGCTCGAGAGATAGCTCTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGTAGTGCCCCCCCCGGAC
CGCCCGGATCCC