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Detailed information on CNT30556066


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L368|RK36_SACHY, E-value = 4e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541469Oryza glaberrimaBrassica napus21.027.7886.55119forward
CNT3059026Oryza glaberrimaAmborella trichopoda20.678.1591.45117forward

Expression of CNT30556066

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTLIRPRLRISRHFVQILRTEALIFIFPYSFLKL*

>peptide 2 (38 aa)
MLRIGTNDSNSSTPTNQSTFCTNFTNRSSYFHISVFLS*

Sequence

>CNT30556066
GGATCTGTAACAGTTATAATAGTATTGTTGAAACTAGCTTGAACATGAATAACTCCTTTTGTTATTCTACGTGCACTCTTCCGTAAACTAAAACGCGCAT
TCCTACGCAAACCAATACGTACTTTCCTACGTGAACCAATTTTTGGTATAGCTTTTGTCATATTTTATTATCTCATAAATATGAGTTAGAAATAACAAAA
AGAAAAAAAGATACAAAGATATCCGTTTCAGGGTAAAATATATCCTTTACTTGAATTTTTTTATTTGGAATTTGGACATTTTCGCGGGTTACTTTTTTTT
TACTTTTTAGAAAGTCAAGTTCTTTTTTCGAAAGATTACCCCTGTCTTTGTTTATGCTTCGGATTGGAACAAATGACTCTAATTCGTCCACGCCTACGAA
TCAGTCGACATTTTGTACAAATTTTACGAACAGAAGCTCTTATTTTCATATTTCCGTATTCCTTTCTTAAACTATGAATTTACTCTTTTGGAAAAAATAA
GTCTCTTTGTTTGAATTTTAGAACTTTGAATTTTTTACCCTAGAAAAAAAAAGAAAAACCTAACCC