CANTATAdb - search

Detailed information on CNT30556053

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30116966	Oryza glaberrima	Oryza nivara	40.65	5.95	99.53	213	reverse complement

Expression of CNT30556053

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHASRTKLSNSIKKEKFSKRKKVNEFSRKVLYRI*

>peptide 2 (49 aa)
ASLDDRAVYNRSSLYYNDSMSSFLELSIYSKSITRSKARSPSYFSIMLL*

Sequence

>CNT30556053
GGCATCACTAGACGATAGGGCGGTATACAACCGCTCCTCATTATACTATAATGATAGTATGAGCAGTTTTTTGGAATTGTCAATATACTCGAAGAGTATA
ACTAGATCCAAAGCAAGGAGTCCTTCCTACTTTTCCATTATGCTTTTGTAGGATTTTTTTTAGTTGATGGTTAGGTTAATTCACGGATCATCCCCTACTT
TTTAGGGAAATTCGTTTATAAAGGATATGGAATAAGAATAGATTAATAAAAGGGATTCTATATTAGTTCAGTACGGGTAGTGATTTGATTGATCTAATAG
GAAAAAGAGTCCAATTTCTTTTTTGGAATTTACACCCCCCTGCTTCGCTTAGTGTTTAAACTAAAAATGCATGCATCTCGCACTAAGTTATCAAATTCAA
TAAAAAAAGAGAAATTTTCAAAAAGAAAGAAAGTGAATGAATTTAGTAGAAAAGTACTGTATCGGATTTGAACCACTGACTCACGTCTTACCGCGGCATT
ACTCTACCACTAAGTAAAAAAAGC