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Detailed information on CNT30556045


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH2|RR4_ORYNI, E-value = 4e-89

BLAST vs NONCODE:
NONORUT000576, E-value = 6e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza glaberrimaOryza sativa10058.6699.853264forward
CNT3020650Oryza glaberrimaCitrullus lanatus13.5125.3488.66441forward
CNT30730408Oryza glaberrimaCorchorus capsularis13.2491.3387.96432forward
CNT30632297Oryza glaberrimaVigna unguiculata13.625.1187.84444forward
CNT30201080Oryza glaberrimaPisum sativum13.5122.1590.25441forward
CNT3094383Oryza glaberrimaSolanum tuberosum3.5553.9589.66116reverse complement
CNT30194121Oryza glaberrimaSecale cereale27.4210094.53895forward
CNT30292655Oryza glaberrimaTriticum aestivum40.565.3887.441322forward
CNT30222203Oryza glaberrimaHordeum vulgare3.8622.5895.24126reverse complement
CNT30390237Oryza glaberrimaTriticum turgidum26.7240.3594.38872forward
CNT30589320Oryza glaberrimaMusa acuminata3.4623.2597.35113forward
CNT30510815Oryza glaberrimaSolanum lycopersicum6.8646.9688.84224forward
CNT30171250Oryza glaberrimaTrifolium pratense3.0927.6793.07101forward
CNT30245953Oryza glaberrimaAvena sativa8.1299.6287.55265reverse complement
CNT30598583Oryza glaberrimaFraxinus excelsior7.6925.290.84251forward
CNT30445979Oryza glaberrimaSaccharum spontaneum12.0410095.17393forward
CNT3018014Oryza glaberrimaZea mays68.284.6190.572226forward
CNT30606803Oryza glaberrimaGossypium raimondii4.1748.0687.5136forward
CNT30232528Oryza glaberrimaAnanas comosus30.4850.2887.74995forward
CNT30217417Oryza glaberrimaKalanchoe fedtschenkoi11.6781.4190.81381forward
CNT30626868Oryza glaberrimaDaucus carota7.3546.6989.17240forward
CNT30689226Oryza glaberrimaTriticum urartu14.8626.1692.78485forward
CNT30351181Oryza glaberrimaEragrostis tef16.48106.5382.53538forward
CNT30362312Oryza glaberrimaSorghum bicolor7.2375.6489.83236reverse complement
CNT30596972Oryza glaberrimaOryza meridionalis38.0599.2899.841242forward
CNT30369475Oryza glaberrimaOryza glumipatula10.3634.6397.93338forward
CNT3022800Oryza glaberrimaPopulus trichocarpa10.4210087.65340forward
CNT30332506Oryza glaberrimaDioscorea rotundata15.4155.2190.06503forward
CNT30149145Oryza glaberrimaBrachypodium distachyon25.8346.9493.95843forward
CNT30103640Oryza glaberrimaOryza rufipogon23.1698.8299.87756forward
CNT30574986Oryza glaberrimaOryza barthii10.3633.0199.7338reverse complement
CNT30116311Oryza glaberrimaOryza nivara11.49100100375forward
CNT30604206Oryza glaberrimaOryza punctata6.1350.2596200forward
CNT30550879Oryza glaberrimaOryza brachyantha6.6253.8799.54216reverse complement

Expression of CNT30556045

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTIYSSNNTIPLFNRNSLYQITMVCKIHIEERTKNKKES*

>peptide 2 (47 aa)
MKFLIRSSDLIYLINGSTTKPPFSEKGEWSYSNSKRFVIFNQFCASI*

>peptide 3 (51 aa)
MLEENDSSKNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

>peptide 4 (30 aa)
MGKYELRALGRFSSGKGEGEENSMNLSVFP*

>peptide 5 (38 aa)
MISPFLYYLPSFYFFFSYSLEQLYIEVNLRQVFGSIMT*

>peptide 6 (35 aa)
MDRKGLVFFQEISSQPSHKRFFLTPMNSINARGKR*

Sequence

>CNT30556045
CATTAAGTCCTCCTCTTTCCGGACAAGACATACAAAGAGACCCGCCAACTTTTTAGTGAACCTTTGAAAGATAGATATTATGATTAGTCCTTTTCTTTAC
TATCTACCGTCCTTCTATTTTTTTTTTAGTTATTCACTGGAGCAATTATATATTGAAGTCAATCTGAGGCAAGTGTTCGGATCTATTATGACATAAGGAT
TGGGTGCCTAACGGACTTTTTTTATCTTGGATTTCTCCACGTAACAAAAAAACCTTTTTTTAATTTAAAAAGCTAGTCTATTTTTTTTAAGAGTATAAGT
CCCTATCTATATCTACTTTCCTTGAGCATAATATAGATTTTTTTATTCGATTCCAAATTCCAAGATAACTCATTAGAATTATTAATAAGATGGTCCTGAT
ATATTAGCAATATTTATATTGCCCCTTTTTATTCGCTTTATTACTTCTATTCTAGACCCTATCGTTTATCCTTATGAAATATAATATAAAATAGAAGGCA
GAGGAAAGAGATATAATGAAATTCTTGATTCGATCTTCCGACCTAATTTATTTGATTAATGGATCAACAACCAAACCCCCATTTTCTGAAAAAGGAGAGT
GGTCTTATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTCTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGC
AGCTTGATCAAACCAAGCTTCTGCAATTTCTGAATCACCCTGTAGAATGGCCTGTTCTCCCCGGTCGGAATAGATCACGGCCATATTATTAAAAGCTTGT
GGTAAGAAGGGGTTTCGTTCTAGTGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATAT
AACTTCGATCATAGGGATCAATTTCTAGTCGCGTAGCTTCATAATAATTTTGCAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGG
TCGTTCGTTCTATTCAAAAAATCTCCGTTCCAAAACCGTACATGAGGTTTTCACCTCATACGGCTCCTCCCTTCTGTACATAGTACTAAGCGAAAAAATC
TAGAGAATAAAAATAGAATTAGTTCCATCTCATTATGGACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCTAGCCAACCTTCCCACAAGAGGTTTTTC
TTAACACCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAAGAATTTCTTTGTTCTCAACGCCTCCTATTTAGAGGAATTAGCCACTTCAACG
ATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACTTGATGGTTGTTTGTTATCCCAACCATTCTTCCCAGCCCTGATACCAATCAGGAAAGGGTTAAT
TTCTAACAAAGTTTTTCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTATCCCCTATGCTACCTATTAGTACTAGTAGAGTAGGATTAGCCTGTAA
TACAGAACCTATCCTGTAGGTGTAACCTTTCGCTCAATACTAAAATCTACAATTGAAGCATCCGAGGCCGCGTCAGTCGAGGATACACGACAGAAGGAGT
TGTTAGTTCACCTCACCTTCCCTAAGCGTGGGTTTCCCTTACTAATTTGGTTTTCTCTCCGCGAACCCCCGCTCTTTCTCGTAAAACCGGGGTGTAGGTA
GGGCTAAAAAAACAAAAAAAAGAGTCAAATCGCACCATCTCTATAATAAGTAAATGCCCTTTTTTCCCCGGAGGTTGTCGGAATTATTCGCAATAAAATA
TTGGCTACAATTGAGAAGGTCTTATCAATGAAATTTCCATTTATACGGGATCTAGGCATAATTCCCAACCCATTCTATCATTCTATATAGAATTCTTTTC
ATTCCTTCACAAAATAACATAAAAAAAAACAAATCCATTCAATTCTTATAAATCGATCCCTATGCTCCAAATGGATAAGAGAGGTATTTCTGCTCAGCCC
AAATTCTCTCTTTTTCCTTCTGTTTGAACAAGAAGAGATAGAAAATATTTGACTAAGATTGGATTTCATTCCACTTTCCTATTTCTTTTCTCAACAACAA
CTTCTCTCATCAACTATTTCGCATTTTCAAAGTCATTAATCGTCCCATACCCTATTTTCTATTTGATTGTATGGGGTAGGATACCTTATGCAAACAGAAT
TCTAGGGTTCCTTTTTTATCGAATAAGAAGAATTCTTCCATTCTCTTTTTCTTTGGTTTGGGGAAAACCCAAACTAAAACTTTTCGAGGGAGCGGAATTC
CTAGTAAAAAAATCCTGGACCCGTCCACTTAGATGAAAAGGAATTTTTCTATCTAATAGAACAATGGAACTCTCGCGCGGTTGTGGTTGTACCTGTACTG
CAGGAATAGGAAAACTCGCTATTCACTCAGTTTTTTTTCCATAATAAGATTATGGAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTA
TGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTTTCTTAATTCAGCAACGTTAATGATTACAATGTATCAAATCAAATGACAATTTA
TTCCAGCAATAATACAATACCTTTATTTAATAGAAATTCTCTATACCAAATTACTATGGTATGTAAAATACACATAGAGGAAAGAACAAAAAACAAAAAG
GAATCCTAGGGTTAATCCATTTCTGTTAGGTGAATGGGAAAATACGAATTAAGAGCCTTAGGTCGATTTAGTTCGGGGAAAGGGGAAGGGGAAGAAAATT
CTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAG
GATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTTCCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGT
TTTGATCTTTGGTTATCCTTCGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATTAACTAAAATATGTCTATGGT
TAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGACCTGT
TGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAA