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Detailed information on CNT30555988

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30618959	Oryza glaberrima	Sesamum indicum	54.76	5.84	80.71	368	forward
CNT30627898	Oryza glaberrima	Daucus carota	46.43	10.14	79.49	312	forward
CNT3057361	Oryza glaberrima	Amborella trichopoda	54.02	7.22	81.54	363	forward
CNT30114189	Oryza glaberrima	Ficus carica	22.77	3.88	83.66	153	forward

Expression of CNT30555988

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDRKGLVFFQEISSQPSHKRFFLTPMNSINARGKR*

>peptide 2 (51 aa)
MLEENDSSKNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

>peptide 3 (45 aa)
LPSVHSTKRKNLENKNRISSISLWTERGWYFSKKSLANLPTRGFS*

Sequence

>CNT30555988
TCCTCCCTTCTGTACATAGTACTAAGCGAAAAAATCTAGAGAATAAAAATAGAATTAGTTCCATCTCATTATGGACCGAAAGGGGCTGGTATTTTTCCAA
GAAATCTCTAGCCAACCTTCCCACAAGAGGTTTTTCTTAACACCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAAGAATTTCTTTGTTCTC
AACGCCTCCTATTTAGAGGAATTAGCCACTTCAACGATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACTTGATGGTTGTTTGTTATCCCAACCATT
CTTCCCAGCCCTGATACCAATCAGGAAAGGGTTAATTTCTAACAAAGTTTTTCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTATCCCCTATGCT
ACCTATTAGTACTAGTAGAGTAGGATTAGCCTGTAATACAGAACCTATCCTGTAGGTGTAACCTTTCGCTCAATACTAAAATCTACAATTGAAGCATCCG
AGGCCGCGTCAGTCGAGGATACACGACAGAAGGAGTTGTTAGTTCACCTCACCTTCCCTAAGCGTGGGTTTCCCTTACTAATTTGGTTTTCTCTCCGCGA
ACCCCCGCTCTTTCTCGTAAAACCGGGGTGTAGGTAGGGCTAAAAAAAACAAAAAAAAGAGTCAAATCGCAC