Detailed information on CNT30555951


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7J1B5|PSBF_DIOBU, E-value = 2e-20

BLAST vs NONCODE:
NONMEST001986, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30277508Oryza glaberrimaChenopodium quinoa23.6322.8588.66194forward
CNT30286499Oryza glaberrimaTriticum aestivum20.4612.9499.4168forward
CNT30221820Oryza glaberrimaHordeum vulgare26.3110.9689.35216reverse complement
CNT30234601Oryza glaberrimaBrassica oleracea29.1150.7489.12239forward
CNT3060074Oryza glaberrimaArabidopsis lyrata22.933.186.7188forward
CNT30679284Oryza glaberrimaTriticum urartu37.3999.0395.11307reverse complement
CNT30355329Oryza glaberrimaLactuca sativa31.6736.6291.92260forward
CNT30149874Oryza glaberrimaBrachypodium distachyon79.2950.595.24651forward
CNT30603960Oryza glaberrimaOryza punctata76.985099.21632reverse complement
CNT30727046Oryza glaberrimaLupinus angustifolius62.9763.9988.78517forward

Expression of CNT30555951

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNPIQNMNRKRKHLLNQSQQYRLQYLSAKEEFFQ*

>peptide 2 (32 aa)
MLETKTVMDSYKDGILPNGDKRILTTLFLSLN*

Sequence

>CNT30555951
TTCATTGGCGAGGGGGTTATAAATCAACTGATGGATTACTTCACTAACATTATTAACAAACAAAATTAACAAACAAAACGAATAAATAGAGGGATTCTGA
CCATCAGAGCAAAGGCTTTCTCTTTGTTATTTTTACAAATCAAAATAGGAAACCCGTTTGTAGGTTATGGAATAGATTAAAAAAGTCGGGTTATAAGAGT
AAGAATTCCGCGGGTCCTTTCCGCTCTAATCAGATAAAAGGGGGTAAGGACCCGCTAAGTTCCTATTTTTTCATGTTTACAACCTGGTCCCTCCAATTAC
TATAGAGATGAACCCAATCCAGAATATGAACCGTAAAAGAAAACACCTATTAAACCAATCACAGCAATACCGGTTACAGTACCTATCAGCCAAAGAGGAA
TTCTTCCAGTAGTATCGGCCATTTCCCCTACTTTCCTCCACATTTTATCAAGTGGTCATGCTAGAGACAAAAACAGTCATGGATAGTTATAAGGATGGTA
TCCTTCCAAATGGGGATAAGAGAATTCTTACTACTCTCTTTCTTTCTCTCAATTGAAGAAGTAATTGGAAAATAAAACAGCAAGTACAAAAATGAGTAAT
AAACCCCAGTATAGACTGGTACGATTCAATTCAACATTTTGTTCATTCGGGTTTGATTGTGTCATAGTTCTATAGTTGGAATTTGGTTTATCGTTGGATG
AACTGCATTGCTGATATTGATCCCAAGAAAAAAACAGTAGGTACAGCTAGTCCGTGAACAGCCAGCCATCGCACTGTAAAAATAGGATAGGTTCGATCTA
TGGTCATTGAGGGCCTCCTAA