Detailed information on CNT30555939


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 1e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546122Oryza glaberrimaIpomoea triloba49.2354.5582.81192forward
CNT30616186Oryza glaberrimaSesamum indicum15.1325.5486.4459forward
CNT30146667Oryza glaberrimaMedicago truncatula20.5128.3783.7580forward
CNT30440942Oryza glaberrimaAegilops tauschii21.2838.2597.5983forward
CNT30338628Oryza glaberrimaEragrostis tef24.8727.3296.9197forward

Expression of CNT30555939

Peptides detected in this lncRNA

>peptide 1 (95 aa)
VADDDGVVAGRPGEDAAVADVVLDVADHGALGYRPDREHVADGERGAAAAVDELPRVHPLRRDEQLLLVLVPERVAERHLGSGTSRGPCGGGCGT*

Sequence

>CNT30555939
GTGGCTGATGACGATGGCGTAGTCGCCGGACGCCCTGGCGAAGACGCCGCGGTCGCCGACGTGGTGCTCGACGTTGCAGACCACGGCGCCCTCGGGTACC
GACCGGATCGGGAGCACGTTGCCGATGGAGAGCGTGGCGCGGCGGCCGCAGTAGACGAACTGCCCCGTGTACATCCCCTCCGCCGCGACGAACAGCTCCT
TCTGGTGCTTGTACCGGAACGGGTGGCGGAACGTCACCTTGGGAGCGGAACCTCGCGGGGCCCTTGCGGTGGTGGGTGTGGGACTTGAACACGGAGCCCG
CACCCTTACGCTGCGCGCGGATCACGCGACCCATCTCCTCGTCGGCGGCGAGACGGCGGCGGCGGCGGCGGGGAGAATGGGGGAGGCGGG