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Detailed information on CNT30555931


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578194Oryza glaberrimaOryza barthii100.8791.6897.491157forward
CNT30593965Oryza glaberrimaEragrostis curvula4.9720.2894.7457reverse complement

Expression of CNT30555931

Peptides detected in this lncRNA

>peptide 1 (57 aa)
DRSCSPSRPAPAPCRSCRVSTTTGAVSTPPPLVQCRRSPPPPSPLCCCSVFCCCSVD*

>peptide 2 (96 aa)
IDPVALAARLLRPAAPAAFLPPPAPSLRRRRWCSVAGRHHHRRRCAAAPFSAAVRWIDLQSSSSQRLGAGQEEQRSQEIGRKRGKVGDFIFQDFTN*

>peptide 3 (29 aa)
MTLFWMFCLHYSRTMRSHGSAIWVFIHYP*

>peptide 4 (31 aa)
MHKSCVCFTSSRLYLLSILYSLLCLIWFLGT*

Sequence

>CNT30555931
GATCGATCCTGTAGCCCTAGCCGCCCGGCTCCTGCGCCCTGCCGCTCCTGCCGCGTTTCTACCACCACCGGCGCCGTCTCTACGCCGCCGCCGTTGGTGC
AGTGTCGCCGGTCGCCACCACCACCGTCGCCGCTGTGCTGCTGCTCCGTTTTCTGCTGCTGTTCGGTGGATTGATTTGCAGAGCAGCAGCAGCCAACGAC
TGGGGGCAGGGCAGGAAGAGCAGAGAAGTCAAGAAATTGGGAGGAAGAGAGGCAAGGTTGGGGATTTTATTTTCCAAGATTTCACAAATTGATCTCAAAG
TTGATTTTTCTCCACAGTAAGGCTGTAAGGGTGTGGAGGGTTCCAACGTTGGAGGATTGAGTCAGAGTATCAAAGGAGTTAAGGCAAGTACAAGACGGAT
TTATGTGATGGACAAACTGAGTTGTTTTGTTTGGCTTTACTTGTATAATTATTATTCAATTGCTTGATATTACTGATTGTATGGCTCTGACGTTATGCTA
CTTATTCGTGTTTTGACCCATATTCAAATTCATGACGTTATTCTGGATGTTCTGTTTACATTATTCAAGAACCATGCGTAGCCATGGGAGTGCAATTTGG
GTCTTTATTCATTATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTAAGAGGATATTCACACCTACCCGGGAGGGAACTACTATCT
TTCGACTTCTTTGGTTTAAAATAAAATAAATCCAACCCTTCATATTGGTTTCTTAATGCATAAATCATGTGTATGTTTTACTAGTTCAAGATTGTACTTG
CTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACTCTTGGACTACACATTA
TTATTGCACACAACTGAAATTTAGTTTTAGATTATACTTTGCTCAGCAACTTGTAAGGGTCATTGAAGGTTCTTATTCTTATTTTTCACGTGGGATTTGT
GAAGCTAGGATGGTCTAGATTGTGTGAATTATATCGGTATTGACTTTTCTTATAACTACCTGTCGTGGATGTCCGTATTTTTAGGGGAGACTTTGCCGAA
ATTTCTAATAATTTTAGGACTTAGTTTTTGAGTATATTTTGGTGTGG