Detailed information on CNT30555927


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578115Oryza glaberrimaOryza barthii10096.0597.41192forward

Expression of CNT30555927

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTLFWMFCLHYSRTMRSHGSAIWVFIHYP*

>peptide 2 (31 aa)
MWLTRVLQTVGRFLRPSIWVRLLKYMKTTACK

>peptide 3 (98 aa)
KKDREIDPVALAARLLRPAAPAAFLPPPAPSLRRRRWCSVAGRHHHRRRCAAAPFSAAVRWIDLQSSSQRLGAGQEEQRSQEIGRKRGKVWRVPTLED*

>peptide 4 (62 aa)
KKGSRDRSCSPSRPAPAPCRSCRVSTTTGAVSTPPPLVQCRRSPPPPSPLCCCSVFCCCSVD*

>peptide 5 (31 aa)
MHKSCVCFTSSRLYLLSILYSLLCLIWFLGT*

Sequence

>CNT30555927
AAAAAAAGGATCGAGAGATCGATCCTGTAGCCCTAGCCGCCCGGCTCCTGCGCCCTGCCGCTCCTGCCGCGTTTCTACCACCACCGGCGCCGTCTCTACG
CCGCCGCCGTTGGTGCAGTGTCGCCGGTCGCCACCACCACCGTCGCCGCTGTGCTGCTGCTCCGTTTTCTGCTGCTGTTCGGTGGATTGATTTGCAGAGC
AGCAGCCAACGACTGGGGGCAGGGCAGGAAGAGCAGAGAAGTCAAGAAATTGGGAGGAAGAGAGGCAAGGTGTGGAGGGTTCCAACGTTGGAGGATTGAG
TCAGAGTATCAAAGGAGTTAAGGCAAGTACAAGACGGATTTATGTGATGGACAAACTGAGTTGTTTTGTTTGGCTTTACTTGTATAATTATTATTCAATT
GCTTGATATTACTGATTGTATGGCTCTGACGTTATGCTACTTATTCGTGTTTTGACCCATATTCAAATTCATGACGTTATTCTGGATGTTCTGTTTACAT
TATTCAAGAACCATGCGTAGCCATGGGAGTGCAATTTGGGTCTTTATTCATTATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTA
AGAGGATATTCACACCTACCCGGGAGGGAACTACTATCTTTCGACTTCTTTGGTTTAAAATAAAATAAATCCAACCCTTCATATTGGTTTCTTAATGCAT
AAATCATGTGTATGTTTTACTAGTTCAAGATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGAT
CGGCATGGGGCGGGAGTAGCACTCTTGGACTACACATTATTATTGCACACAACTGAAATTTAGTTTTAGATTATACTTTGCTCAGCAACTTGTAAGGGTC
ATTGAAGGTTCTTATTCTTATTTTTCACGTGGGATTTGTGAAGCTAGGATGGTCTAGATTGTGTGAATTATATCGGTATTGACTTTTCTTATAACTACCT
GTCGTGGATGTCCGTATTTTTAGGGGAGACTTTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTATATTTTGGTGTGGCATTCTAGGTATGT
GGTTAACTAGGGTGTTACAGACCGTTGGGCGGTTTCTCCGACCGTCCATATGGGTAAGACTGTTAAAATACATGAAAACAACTGCATGTAAA