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Detailed information on CNT30555885


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQK9|NLTP1_ORYSJ, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697790Oryza glaberrimaOryza sativa45.0468.2593.67490forward
CNT30676686Oryza glaberrimaSetaria viridis15.7244.5387.13171forward
CNT30524155Oryza glaberrimaSetaria italica17.8342.8386.6194forward
CNT30182409Oryza glaberrimaSecale cereale8.2728.9484.4490forward
CNT30247616Oryza glaberrimaAvena sativa18.6620.8483.74203forward
CNT30471439Oryza glaberrimaSaccharum spontaneum21.7889.188.19237forward
CNT30137433Oryza glaberrimaLolium perenne17.4629.5580.53190forward
CNT3068317Oryza glaberrimaLeersia perrieri31.869.288.73346forward
CNT30367388Oryza glaberrimaSorghum bicolor20.461.1684.68222forward
CNT30597117Oryza glaberrimaOryza meridionalis32.6371.2992.39355forward
CNT30151138Oryza glaberrimaBrachypodium distachyon11.6742.9187.4127forward
CNT30104631Oryza glaberrimaOryza rufipogon25.3779.3195.65276forward
CNT30578263Oryza glaberrimaOryza barthii93.84100.2998.731021forward
CNT30117815Oryza glaberrimaOryza nivara21.0566.3893.45229forward

Expression of CNT30555885

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLDDVTDERICTSVELYKELYMYQKELYVCVIFENKHVVQGVAVHACRISS*

>peptide 2 (68 aa)
MAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTCCCCWCVVLDRLLLQVRSIDENSRECRGL*

>peptide 3 (31 aa)
MHVESLASSLWYTYTSRRSKTYEMNTQEEES*

>peptide 4 (32 aa)
MIHPIDSSAHPAHMHIYILDDGVYIMQLAMLN*

>peptide 5 (53 aa)
MLAALPALSPLMPRAAFLRQLHAVRLSAVLLAAALRLLTPLQQAADGPAPPRA*

Sequence

>CNT30555885
GAAATGACTTCCTTGTGACAGCCCGCTAATTCTAGGCATGTTAGATGACGTCACAGATGAGAGGATCTGTACTAGCGTGGAGCTCTACAAAGAGCTATAT
ATGTACCAAAAAGAGCTATATGTATGTGTAATATTCGAAAACAAGCACGTAGTACAAGGAGTTGCAGTACATGCATGTAGAATCTCTAGCTAGCTCTCTC
TGGTACACGTACACCTCGAGAAGGAGCAAAACGTACGAGATGAACACACAAGAAGAAGAAAGCTAGCTAGCCTGACCGGCCGGGCCGATCAACCATGGAT
GCACACACATGCATGCATGGTGATTGATCGACCTTAGCTAGCTCATCTTTTTATTCCAGAATACGTACAGATACTACTAATATTGGATACAGAATTCGAT
CGGCTCCACACATCGACCCACCGTCGCGCTTCTGTATACATATAAATGATCCATCCGATCGATAGCTCAGCTCACCCTGCACACATGCACATATATATAT
TAGATGATGGAGTATATATCATGCAATTAGCCATGCTTAATTAATTATATTTAACAGAATATATATAATTAGAGATGATGAGATGAATACCTGGAGCAGT
CGATGGAAGCGCTGATGGTGTAGGGGACGCTGACGCCGCACTTAGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGCCCCTTGATGCCGCGGGCCGCGTT
CTTGAGGCAGTTGCACGCGGTGCGCCTGTCAGCGGTGCTGCTGGCTGCGGCCTTGAGGCTCCTCACGCCGCTGCAGCAGGCCGCCGACGGGCCGGCGCCG
CCGCGGGCGTAGGTGAGGCAGGGCCCAACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGTGTGTGGGCCCGCCAGGAGCAGAGCTGCCA
CGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCGACTTGCTGCTGCTGCTGGTGTGTGGTGCTCGA
TCGTTTGCTGCTGCAGGTGAGATCGATCGATGAGAATTCCCGGGAATGTAGGGGGCTTTAAATAGCTATGATTTCATCTGTGCCGATG